RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 NBPF7P0C2Y1 421 aaPredicted RBP18.75■□□□□ 0.59
VIPAS39-210ENST00000557466 RBM17Q96I25 401 aaKnown RBP18.75■□□□□ 0.59
VIPAS39-210ENST00000557466 CRAMP1Q96RY5 1269 aa18.75■□□□□ 0.59
VIPAS39-210ENST00000557466 TMEM57Q8N5G2 664 aa18.74■□□□□ 0.59
VIPAS39-210ENST00000557466 CCDC85AQ96PX6 553 aaPredicted RBP18.74■□□□□ 0.59
VIPAS39-210ENST00000557466 USP44Q9H0E7 712 aa18.74■□□□□ 0.59
VIPAS39-210ENST00000557466 DCAF8L1A6NGE4 600 aa18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 RLBP1P12271 317 aa18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 ALDH1B1P30837 517 aa18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 DDX46Q7L014 1031 aaKnown RBP18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 FTSJ3Q8IY81 847 aaKnown RBP18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 DZIP1LQ8IYY4 767 aaKnown RBP18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 SUCLG2Q96I99 432 aa18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 ZNF219Q9P2Y4 722 aaPredicted RBP18.73■□□□□ 0.59
VIPAS39-210ENST00000557466 CHD4Q14839 1912 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 PLIN1O60240 522 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 FOXO4P98177 505 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 CCDC152Q4G0S7 254 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 EPHA10Q5JZY3 1008 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 SLC51AQ86UW1 340 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 TTLL11Q8NHH1 800 aa18.72■□□□□ 0.59
VIPAS39-210ENST00000557466 RTL9Q8NET4 1388 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 C21orf2O43822 256 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 GRAPQ13588 217 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 GRAPLQ8TC17 118 aaPredicted RBP18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 PANK1Q8TE04 598 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 KAZALD1Q96I82 304 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 MEIS3Q99687 375 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 GREM2Q9H772 168 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 SEC31BQ9NQW1 1179 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 SBF1O95248 1867 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 CCDC88AQ3V6T2 1871 aa18.71■□□□□ 0.59
VIPAS39-210ENST00000557466 A0A1B0GUL6 1792 aa18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 PPEF1O14829 653 aaPredicted RBP18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 GRIN3BO60391 1043 aa18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 FAM161AQ3B820 660 aa18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 OLFM4Q6UX06 510 aa18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 SNED1Q8TER0 1413 aa18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 C7orf43Q8WVR3 580 aa18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 CELF1Q92879 486 aaKnown RBP18.7■□□□□ 0.58
VIPAS39-210ENST00000557466 CSF1RP07333 972 aa18.69■□□□□ 0.58
VIPAS39-210ENST00000557466 LTBP1Q14766 1721 aa18.69■□□□□ 0.58
VIPAS39-210ENST00000557466 UBTFL1P0CB47 393 aaPredicted RBP18.68■□□□□ 0.58
VIPAS39-210ENST00000557466 LMBR1LQ6UX01 489 aa18.68■□□□□ 0.58
VIPAS39-210ENST00000557466 ITPRIPQ8IWB1 547 aa18.68■□□□□ 0.58
VIPAS39-210ENST00000557466 BICC1Q9H694 974 aaKnown RBP18.68■□□□□ 0.58
VIPAS39-210ENST00000557466 CCDC93Q567U6 631 aa18.67■□□□□ 0.58
VIPAS39-210ENST00000557466 ARHGAP27Q6ZUM4 889 aa18.67■□□□□ 0.58
VIPAS39-210ENST00000557466 ANKRD44Q8N8A2 993 aa18.67■□□□□ 0.58
VIPAS39-210ENST00000557466 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.67■□□□□ 0.58
VIPAS39-210ENST00000557466 CHMP3Q9Y3E7 222 aa18.67■□□□□ 0.58
VIPAS39-210ENST00000557466 TIAM2Q8IVF5 1701 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 NFKBIEO00221 500 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 BBOX1O75936 387 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 MS4A1P11836 297 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 ITGA6P23229 1130 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 RASSF7Q02833 373 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 RABL6Q3YEC7 729 aaPredicted RBP18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 C20orf194Q5TEA3 1177 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 SOGA3Q5TF21 947 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 ATP6V0A2Q9Y487 856 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 LRRFIP2Q9Y608 721 aaKnown RBP18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 DUOX1Q9NRD9 1551 aa18.66■□□□□ 0.58
VIPAS39-210ENST00000557466 DICER1Q9UPY3 1922 aaKnown RBP18.65■□□□□ 0.58
VIPAS39-210ENST00000557466 GNAI3P08754 354 aa18.65■□□□□ 0.58
VIPAS39-210ENST00000557466 RRP1P56182 461 aaKnown RBP18.65■□□□□ 0.58
VIPAS39-210ENST00000557466 RPS8P62241 208 aaKnown RBP18.65■□□□□ 0.58
VIPAS39-210ENST00000557466 CDC5LQ99459 802 aaKnown RBP18.65■□□□□ 0.58
VIPAS39-210ENST00000557466 TMC4Q7Z404 712 aa18.64■□□□□ 0.57
VIPAS39-210ENST00000557466 ANKRD18AQ8IVF6 992 aa18.64■□□□□ 0.57
VIPAS39-210ENST00000557466 ANKRD18BA2A2Z9 1011 aa18.63■□□□□ 0.57
VIPAS39-210ENST00000557466 PDE3AQ14432 1141 aa18.63■□□□□ 0.57
VIPAS39-210ENST00000557466 MVPQ14764 893 aaKnown RBP18.63■□□□□ 0.57
VIPAS39-210ENST00000557466 CC2D2BQ6DHV5 1058 aa18.63■□□□□ 0.57
VIPAS39-210ENST00000557466 SP8Q8IXZ3 490 aa18.63■□□□□ 0.57
VIPAS39-210ENST00000557466 COG6Q9Y2V7 657 aa18.63■□□□□ 0.57
VIPAS39-210ENST00000557466 IFIT5Q13325 482 aaKnown RBP18.62■□□□□ 0.57
VIPAS39-210ENST00000557466 LTBP3Q9NS15 1303 aa18.62■□□□□ 0.57
VIPAS39-210ENST00000557466 ZBTB7BO15156 539 aaPredicted RBP18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 PRELPP51888 382 aa18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 CCDC57Q2TAC2 916 aa18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 RTKN2Q8IZC4 609 aa18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 ZNF594Q96JF6 807 aaPredicted RBP18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 TAOK3Q9H2K8 898 aa18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 HDAC5Q9UQL6 1122 aa18.61■□□□□ 0.57
VIPAS39-210ENST00000557466 GNAI2P04899 355 aa18.6■□□□□ 0.57
VIPAS39-210ENST00000557466 IGHMBP2P38935 993 aaKnown RBP18.6■□□□□ 0.57
VIPAS39-210ENST00000557466 FKBP4Q02790 459 aaKnown RBP eCLIP18.6■□□□□ 0.57
VIPAS39-210ENST00000557466 TMX4Q9H1E5 349 aaPredicted RBP18.6■□□□□ 0.57
VIPAS39-210ENST00000557466 C1orf115Q9H7X2 142 aa18.6■□□□□ 0.57
VIPAS39-210ENST00000557466 GPSM2P81274 684 aa18.59■□□□□ 0.57
VIPAS39-210ENST00000557466 BSDC1Q9NW68 430 aaPredicted RBP18.59■□□□□ 0.57
VIPAS39-210ENST00000557466 DDX19BQ9UMR2 479 aa18.59■□□□□ 0.57
VIPAS39-210ENST00000557466 COL4A5P29400 1685 aa18.58■□□□□ 0.57
VIPAS39-210ENST00000557466 RFX5P48382 616 aaPredicted RBP18.58■□□□□ 0.56
VIPAS39-210ENST00000557466 GRIPAP1Q4V328 841 aa18.58■□□□□ 0.56
VIPAS39-210ENST00000557466 TAF7LQ5H9L4 462 aa18.58■□□□□ 0.56
VIPAS39-210ENST00000557466 MPNDQ8N594 471 aa18.58■□□□□ 0.56
VIPAS39-210ENST00000557466 PSMD1Q99460 953 aa18.58■□□□□ 0.56
VIPAS39-210ENST00000557466 MPHOSPH8Q99549 860 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms