RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SARM1Q6SZW1 724 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 FERMT3Q86UX7 667 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 GTF3C6Q969F1 213 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 CHMP4CQ96CF2 233 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 SUCLG2Q96I99 432 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 LLPHQ9BRT6 129 aaKnown RBP19.21■□□□□ 0.67
SHMT2-231ENST00000557433 TRIM5Q9C035 493 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 KIF13AQ9H1H9 1805 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 CCDC186Q7Z3E2 898 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 DRC7Q8IY82 874 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 BICC1Q9H694 974 aaKnown RBP19.21■□□□□ 0.67
SHMT2-231ENST00000557433 U3KPZ7 1027 aaPredicted RBP19.21■□□□□ 0.67
SHMT2-231ENST00000557433 ANXA1P04083 346 aa19.2■□□□□ 0.66
SHMT2-231ENST00000557433 ZNF165P49910 485 aa19.2■□□□□ 0.66
SHMT2-231ENST00000557433 CAMK4Q16566 473 aa19.2■□□□□ 0.66
SHMT2-231ENST00000557433 TAF5LO75529 589 aa19.19■□□□□ 0.66
SHMT2-231ENST00000557433 RESTQ13127 1097 aa19.19■□□□□ 0.66
SHMT2-231ENST00000557433 ZSCAN25Q6NSZ9 544 aa19.19■□□□□ 0.66
SHMT2-231ENST00000557433 BICD2Q8TD16 824 aa19.19■□□□□ 0.66
SHMT2-231ENST00000557433 KAZALD1Q96I82 304 aa19.19■□□□□ 0.66
SHMT2-231ENST00000557433 HMGB1P09429 215 aaKnown RBP19.19■□□□□ 0.66
SHMT2-231ENST00000557433 ZSCAN20P17040 1043 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-231ENST00000557433 ATP5JP18859 108 aa19.19■□□□□ 0.66
SHMT2-231ENST00000557433 CWF19L2Q2TBE0 894 aaKnown RBP19.19■□□□□ 0.66
SHMT2-231ENST00000557433 CCDC8Q9H0W5 538 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-231ENST00000557433 KCNA6P17658 529 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 NEXNQ0ZGT2 675 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 MPRIPQ6WCQ1 1025 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 CKAP2LQ8IYA6 745 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 TSC1Q92574 1164 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 NEK1Q96PY6 1258 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 BOLA2Q9H3K6 86 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 COL15A1P39059 1388 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 ADAMTS7Q9UKP4 1686 aa19.18■□□□□ 0.66
SHMT2-231ENST00000557433 ZBTB7CA1YPR0 619 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 NAA16Q6N069 864 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-231ENST00000557433 C14orf37Q86TY3 774 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 MRFAP1L1Q96HT8 127 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 SIPA1L3O60292 1781 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-231ENST00000557433 CAMTA1Q9Y6Y1 1673 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 H3BQV1 296 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 PROSER3Q2NL68 480 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 IFFO2Q5TF58 517 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 PGBD1Q96JS3 809 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 COPRSQ9NQ92 184 aa19.17■□□□□ 0.66
SHMT2-231ENST00000557433 GOLGA6L19H0YKK7 550 aa19.16■□□□□ 0.66
SHMT2-231ENST00000557433 FAM173BQ6P4H8 233 aa19.16■□□□□ 0.66
SHMT2-231ENST00000557433 SMARCC2Q8TAQ2 1214 aa19.16■□□□□ 0.66
SHMT2-231ENST00000557433 DDX54Q8TDD1 881 aaKnown RBP19.16■□□□□ 0.66
SHMT2-231ENST00000557433 TFIP11Q9UBB9 837 aaKnown RBP19.16■□□□□ 0.66
SHMT2-231ENST00000557433 CLIP2Q9UDT6 1046 aa19.16■□□□□ 0.66
SHMT2-231ENST00000557433 CHMP3Q9Y3E7 222 aa19.16■□□□□ 0.66
SHMT2-231ENST00000557433 NR1I2O75469 434 aa19.15■□□□□ 0.66
SHMT2-231ENST00000557433 STX1AQ16623 288 aa19.15■□□□□ 0.66
SHMT2-231ENST00000557433 KIF20AO95235 890 aa19.15■□□□□ 0.66
SHMT2-231ENST00000557433 TNNT1P13805 278 aa19.15■□□□□ 0.66
SHMT2-231ENST00000557433 JARID2Q92833 1246 aaPredicted RBP19.15■□□□□ 0.66
SHMT2-231ENST00000557433 BRF1Q92994 677 aa19.15■□□□□ 0.66
SHMT2-231ENST00000557433 CGNQ9P2M7 1197 aaKnown RBP19.15■□□□□ 0.66
SHMT2-231ENST00000557433 RBM6P78332 1123 aaKnown RBP19.14■□□□□ 0.65
SHMT2-231ENST00000557433 ZNF589Q86UQ0 364 aaPredicted RBP19.14■□□□□ 0.65
SHMT2-231ENST00000557433 ARID3AQ99856 593 aa19.14■□□□□ 0.65
SHMT2-231ENST00000557433 TLR7Q9NYK1 1049 aaKnown RBP19.14■□□□□ 0.65
SHMT2-231ENST00000557433 RCOR1Q9UKL0 485 aa19.14■□□□□ 0.65
SHMT2-231ENST00000557433 PFKFB2O60825 505 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 DHX8Q14562 1220 aaKnown RBP19.13■□□□□ 0.65
SHMT2-231ENST00000557433 RIC3Q7Z5B4 369 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 CCDC112Q8NEF3 446 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 DNAJC25Q9H1X3 360 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 KCND1Q9NSA2 647 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 OGFRQ9NZT2 677 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 PXDNQ92626 1479 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 SLIT3O75094 1523 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 IQCB1Q15051 598 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 ATP2B3Q16720 1220 aa19.13■□□□□ 0.65
SHMT2-231ENST00000557433 ZNF396Q96N95 335 aaPredicted RBP19.13■□□□□ 0.65
SHMT2-231ENST00000557433 NEURL1BA8MQ27 555 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 IGKV5-2P06315 115 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 CBX1P83916 185 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 NCBP1Q09161 790 aaKnown RBP19.12■□□□□ 0.65
SHMT2-231ENST00000557433 GCKRQ14397 625 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 PDIA6Q15084 440 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 MCMDC2Q4G0Z9 681 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 KIF2AO00139 706 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-231ENST00000557433 HSP90B1P14625 803 aaKnown RBP19.12■□□□□ 0.65
SHMT2-231ENST00000557433 CEBPAP49715 358 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-231ENST00000557433 STK3Q13188 491 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 TPD52L1Q16890 204 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-231ENST00000557433 Q6ZUG5 572 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 TCEANC2Q96MN5 208 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 METTL22Q9BUU2 404 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-231ENST00000557433 ANO10Q9NW15 660 aa19.12■□□□□ 0.65
SHMT2-231ENST00000557433 RGPD2P0DJD1 1756 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 PSME1Q06323 249 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 LRMPQ12912 555 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 TNNI3KQ59H18 835 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 CCDC73Q6ZRK6 1079 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 ARHGEF25Q86VW2 580 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 LRRC8AQ8IWT6 810 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 C16orf45Q96MC5 204 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms