RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 AKAP2Q9Y2D5 859 aa15.29■□□□□ 0.04
SHMT2-229ENST00000557348 GOLGA6L3A6NEY3 463 aa15.28■□□□□ 0.04
SHMT2-229ENST00000557348 HMGB2P26583 209 aaKnown RBP15.28■□□□□ 0.04
SHMT2-229ENST00000557348 TFCP2Q12800 502 aa15.28■□□□□ 0.04
SHMT2-229ENST00000557348 INTS5Q6P9B9 1019 aaKnown RBP15.28■□□□□ 0.04
SHMT2-229ENST00000557348 ZNF34Q8IZ26 560 aa15.28■□□□□ 0.04
SHMT2-229ENST00000557348 CIZ1Q9ULV3 898 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-229ENST00000557348 MRE11P49959 708 aa15.28■□□□□ 0.04
SHMT2-229ENST00000557348 IFIT5Q13325 482 aaKnown RBP15.28■□□□□ 0.04
SHMT2-229ENST00000557348 KLHDC4Q8TBB5 520 aa15.28■□□□□ 0.04
SHMT2-229ENST00000557348 JARID2Q92833 1246 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-229ENST00000557348 AFF2P51816 1311 aa15.27■□□□□ 0.04
SHMT2-229ENST00000557348 CNTNAP4Q9C0A0 1308 aa15.27■□□□□ 0.04
SHMT2-229ENST00000557348 PDE8AO60658 829 aa15.27■□□□□ 0.03
SHMT2-229ENST00000557348 TAF7LQ5H9L4 462 aa15.27■□□□□ 0.03
SHMT2-229ENST00000557348 CLEC4GQ6UXB4 293 aa15.27■□□□□ 0.03
SHMT2-229ENST00000557348 CCDC8Q9H0W5 538 aaPredicted RBP15.27■□□□□ 0.03
SHMT2-229ENST00000557348 CHMP5Q9NZZ3 219 aa15.27■□□□□ 0.03
SHMT2-229ENST00000557348 CEP126Q9P2H0 1117 aa15.27■□□□□ 0.03
SHMT2-229ENST00000557348 TRMT112Q9UI30 125 aaKnown RBP15.27■□□□□ 0.03
SHMT2-229ENST00000557348 TRPC5Q9UL62 973 aaPredicted RBP15.27■□□□□ 0.03
SHMT2-229ENST00000557348 AK9Q5TCS8 1911 aa15.27■□□□□ 0.03
SHMT2-229ENST00000557348 CTSWP56202 376 aa15.26■□□□□ 0.03
SHMT2-229ENST00000557348 HLFQ16534 295 aa15.26■□□□□ 0.03
SHMT2-229ENST00000557348 ATG9AQ7Z3C6 839 aa15.26■□□□□ 0.03
SHMT2-229ENST00000557348 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.26■□□□□ 0.03
SHMT2-229ENST00000557348 GJD4Q96KN9 370 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-229ENST00000557348 NHSQ6T4R5 1651 aa15.26■□□□□ 0.03
SHMT2-229ENST00000557348 ATRNO75882 1429 aa15.26■□□□□ 0.03
SHMT2-229ENST00000557348 HSP90AA1P07900 732 aaKnown RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 LRRFIP1Q32MZ4 808 aaKnown RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 RC3H1Q5TC82 1133 aaKnown RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 ZNF609O15014 1411 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 COL5A3P25940 1745 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 ANKRD18BA2A2Z9 1011 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 DDX11L8A8MPP1 907 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 IRS4O14654 1257 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 ONECUT3O60422 494 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 ITPK1Q13572 414 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 FAM89AQ96GI7 184 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 SNRKQ9NRH2 765 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 DBNLQ9UJU6 430 aaKnown RBP15.25■□□□□ 0.03
SHMT2-229ENST00000557348 ABCC12Q96J65 1359 aa15.25■□□□□ 0.03
SHMT2-229ENST00000557348 SH3TC1Q8TE82 1336 aa15.24■□□□□ 0.03
SHMT2-229ENST00000557348 GPTP24298 496 aa15.24■□□□□ 0.03
SHMT2-229ENST00000557348 HSPA4P34932 840 aa15.24■□□□□ 0.03
SHMT2-229ENST00000557348 FSD1Q9BTV5 496 aa15.24■□□□□ 0.03
SHMT2-229ENST00000557348 UTP14AQ9BVJ6 771 aaKnown RBP15.24■□□□□ 0.03
SHMT2-229ENST00000557348 SLKQ9H2G2 1235 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-229ENST00000557348 TBC1D2BQ9UPU7 963 aa15.24■□□□□ 0.03
SHMT2-229ENST00000557348 KAT6BQ8WYB5 2073 aa15.23■□□□□ 0.03
SHMT2-229ENST00000557348 CAMTA2O94983 1202 aa15.23■□□□□ 0.03
SHMT2-229ENST00000557348 MAP4K4O95819 1239 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-229ENST00000557348 TTLL11Q8NHH1 800 aa15.23■□□□□ 0.03
SHMT2-229ENST00000557348 HAUS7Q99871 368 aa15.23■□□□□ 0.03
SHMT2-229ENST00000557348 TLR7Q9NYK1 1049 aaKnown RBP15.23■□□□□ 0.03
SHMT2-229ENST00000557348 KCNQ2O43526 872 aa15.22■□□□□ 0.03
SHMT2-229ENST00000557348 CWC27Q6UX04 472 aaKnown RBP15.22■□□□□ 0.03
SHMT2-229ENST00000557348 BOLA2Q9H3K6 86 aa15.22■□□□□ 0.03
SHMT2-229ENST00000557348 NUP98P52948 1817 aa15.22■□□□□ 0.03
SHMT2-229ENST00000557348 RTL9Q8NET4 1388 aa15.22■□□□□ 0.03
SHMT2-229ENST00000557348 CCDC158Q5M9N0 1113 aa15.22■□□□□ 0.03
SHMT2-229ENST00000557348 LSG1Q9H089 658 aaKnown RBP15.22■□□□□ 0.03
SHMT2-229ENST00000557348 SPEF2Q9C093 1822 aa15.21■□□□□ 0.03
SHMT2-229ENST00000557348 ITGA6P23229 1130 aa15.21■□□□□ 0.03
SHMT2-229ENST00000557348 MCM4P33991 863 aa15.21■□□□□ 0.03
SHMT2-229ENST00000557348 SKOR2Q2VWA4 1001 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-229ENST00000557348 DBNDD2Q9BQY9 259 aa15.21■□□□□ 0.03
SHMT2-229ENST00000557348 CWC22Q9HCG8 908 aaKnown RBP15.21■□□□□ 0.03
SHMT2-229ENST00000557348 UBN2Q6ZU65 1347 aa15.21■□□□□ 0.02
SHMT2-229ENST00000557348 A0A1B0GUL7 405 aa15.2■□□□□ 0.02
SHMT2-229ENST00000557348 TPM2P07951 284 aa15.2■□□□□ 0.02
SHMT2-229ENST00000557348 RXRBP28702 533 aa15.2■□□□□ 0.02
SHMT2-229ENST00000557348 TERF1P54274 439 aa15.2■□□□□ 0.02
SHMT2-229ENST00000557348 RNF20Q5VTR2 975 aa15.2■□□□□ 0.02
SHMT2-229ENST00000557348 NEUROD6Q96NK8 337 aa15.2■□□□□ 0.02
SHMT2-229ENST00000557348 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-229ENST00000557348 BCORQ6W2J9 1755 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 CCDC152Q4G0S7 254 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 LRRC24Q50LG9 513 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 LDHAL6AQ6ZMR3 332 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 KBTBD3Q8NAB2 608 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 RRAGDQ9NQL2 400 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-229ENST00000557348 CCDC171Q6TFL3 1326 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 MROH5Q6ZUA9 1318 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 LRP5O75197 1615 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 RPS6KA4O75676 772 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 ZKSCAN1P17029 563 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-229ENST00000557348 GORABQ5T7V8 394 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 LINC00116Q8NCU8 138 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 ZNF594Q96JF6 807 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-229ENST00000557348 ZNF512BQ96KM6 892 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-229ENST00000557348 CNNM1Q9NRU3 951 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 NIP7Q9Y221 180 aaKnown RBP eCLIP15.19■□□□□ 0.02
SHMT2-229ENST00000557348 MYH3P11055 1940 aa15.19■□□□□ 0.02
SHMT2-229ENST00000557348 DDIT3P35638 169 aa15.18■□□□□ 0.02
SHMT2-229ENST00000557348 NEK4P51957 841 aa15.18■□□□□ 0.02
SHMT2-229ENST00000557348 NMIQ13287 307 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-229ENST00000557348 HSP90AA2PQ14568 343 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-229ENST00000557348 METTL24Q5JXM2 366 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms