RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 C7orf43Q8WVR3 580 aa17.19■□□□□ 0.34
SHMT2-228ENST00000557302 ARHGAP45Q92619 1136 aa17.19■□□□□ 0.34
SHMT2-228ENST00000557302 C9orf78Q9NZ63 289 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-228ENST00000557302 CTSWP56202 376 aa17.18■□□□□ 0.34
SHMT2-228ENST00000557302 GRAPQ13588 217 aa17.18■□□□□ 0.34
SHMT2-228ENST00000557302 GRAPLQ8TC17 118 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-228ENST00000557302 FRAT1Q92837 279 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-228ENST00000557302 PLA2G12BQ9BX93 195 aa17.18■□□□□ 0.34
SHMT2-228ENST00000557302 BBOX1O75936 387 aa17.17■□□□□ 0.34
SHMT2-228ENST00000557302 CC2D2BQ6DHV5 1058 aa17.17■□□□□ 0.34
SHMT2-228ENST00000557302 TMX4Q9H1E5 349 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-228ENST00000557302 CACNA1SQ13698 1873 aa17.16■□□□□ 0.34
SHMT2-228ENST00000557302 NFKBIEO00221 500 aa17.16■□□□□ 0.34
SHMT2-228ENST00000557302 CCT4P50991 539 aaKnown RBP17.16■□□□□ 0.34
SHMT2-228ENST00000557302 RASSF7Q02833 373 aa17.16■□□□□ 0.34
SHMT2-228ENST00000557302 OLFM4Q6UX06 510 aa17.16■□□□□ 0.34
SHMT2-228ENST00000557302 RTKN2Q8IZC4 609 aa17.16■□□□□ 0.34
SHMT2-228ENST00000557302 CCDC85AQ96PX6 553 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-228ENST00000557302 TAOK3Q9H2K8 898 aa17.16■□□□□ 0.34
SHMT2-228ENST00000557302 ATF7IPQ6VMQ6 1270 aa17.15■□□□□ 0.34
SHMT2-228ENST00000557302 TMC4Q7Z404 712 aa17.15■□□□□ 0.34
SHMT2-228ENST00000557302 TTLL11Q8NHH1 800 aa17.15■□□□□ 0.34
SHMT2-228ENST00000557302 CELF1Q92879 486 aaKnown RBP17.15■□□□□ 0.34
SHMT2-228ENST00000557302 ATP6V0A2Q9Y487 856 aa17.15■□□□□ 0.34
SHMT2-228ENST00000557302 TRIM27P14373 513 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 LMNB1P20700 586 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 GRIPAP1Q4V328 841 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 C9orf131Q5VYM1 1079 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 ZKSCAN2Q63HK3 967 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 SEC31BQ9NQW1 1179 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 LTBP3Q9NS15 1303 aa17.14■□□□□ 0.33
SHMT2-228ENST00000557302 NBPF7P0C2Y1 421 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-228ENST00000557302 RPS8P62241 208 aaKnown RBP17.13■□□□□ 0.33
SHMT2-228ENST00000557302 FKBP4Q02790 459 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHMT2-228ENST00000557302 SP8Q8IXZ3 490 aa17.13■□□□□ 0.33
SHMT2-228ENST00000557302 GREM2Q9H772 168 aa17.13■□□□□ 0.33
SHMT2-228ENST00000557302 RNF181Q9P0P0 153 aa17.13■□□□□ 0.33
SHMT2-228ENST00000557302 UTYO14607 1347 aa17.13■□□□□ 0.33
SHMT2-228ENST00000557302 RTL9Q8NET4 1388 aa17.13■□□□□ 0.33
SHMT2-228ENST00000557302 CSF1RP07333 972 aa17.12■□□□□ 0.33
SHMT2-228ENST00000557302 CDC5LQ99459 802 aaKnown RBP17.12■□□□□ 0.33
SHMT2-228ENST00000557302 USP44Q9H0E7 712 aa17.12■□□□□ 0.33
SHMT2-228ENST00000557302 FOXO4P98177 505 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 FAM161AQ3B820 660 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 INTS3Q68E01 1043 aaKnown RBP17.11■□□□□ 0.33
SHMT2-228ENST00000557302 SLC51AQ86UW1 340 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 ANKRD18AQ8IVF6 992 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 CLUAP1Q96AJ1 413 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 SUCLG2Q96I99 432 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 PSMD1Q99460 953 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 RCAN3Q9UKA8 241 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 FER1L6Q2WGJ9 1857 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 SNED1Q8TER0 1413 aa17.11■□□□□ 0.33
SHMT2-228ENST00000557302 ITGA6P23229 1130 aa17.1■□□□□ 0.33
SHMT2-228ENST00000557302 PRELPP51888 382 aa17.1■□□□□ 0.33
SHMT2-228ENST00000557302 EPHA10Q5JZY3 1008 aa17.1■□□□□ 0.33
SHMT2-228ENST00000557302 LMBR1LQ6UX01 489 aa17.1■□□□□ 0.33
SHMT2-228ENST00000557302 TNNQ9UQP3 1299 aa17.1■□□□□ 0.33
SHMT2-228ENST00000557302 CHMP3Q9Y3E7 222 aa17.1■□□□□ 0.33
SHMT2-228ENST00000557302 MYH3P11055 1940 aa17.09■□□□□ 0.33
SHMT2-228ENST00000557302 CEP350Q5VT06 3117 aa17.09■□□□□ 0.33
SHMT2-228ENST00000557302 DPP8Q6V1X1 898 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-228ENST00000557302 FTSJ3Q8IY81 847 aaKnown RBP17.09■□□□□ 0.33
SHMT2-228ENST00000557302 MPNDQ8N594 471 aa17.09■□□□□ 0.33
SHMT2-228ENST00000557302 ZNF277Q9NRM2 450 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-228ENST00000557302 COL4A1P02462 1669 aa17.09■□□□□ 0.33
SHMT2-228ENST00000557302 TAF1P21675 1872 aa17.09■□□□□ 0.33
SHMT2-228ENST00000557302 ANKRD18BA2A2Z9 1011 aa17.08■□□□□ 0.32
SHMT2-228ENST00000557302 UBTFL1P0CB47 393 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-228ENST00000557302 IGHMBP2P38935 993 aaKnown RBP17.08■□□□□ 0.32
SHMT2-228ENST00000557302 IFIT5Q13325 482 aaKnown RBP17.08■□□□□ 0.32
SHMT2-228ENST00000557302 KAZALD1Q96I82 304 aa17.08■□□□□ 0.32
SHMT2-228ENST00000557302 ZC3H4Q9UPT8 1303 aaKnown RBP17.07■□□□□ 0.32
SHMT2-228ENST00000557302 PPP4R3CPQ6ZMV5 832 aa17.07■□□□□ 0.32
SHMT2-228ENST00000557302 DZIP1LQ8IYY4 767 aaKnown RBP17.07■□□□□ 0.32
SHMT2-228ENST00000557302 SUPT20HQ8NEM7 779 aa17.07■□□□□ 0.32
SHMT2-228ENST00000557302 BICC1Q9H694 974 aaKnown RBP17.07■□□□□ 0.32
SHMT2-228ENST00000557302 BSDC1Q9NW68 430 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-228ENST00000557302 NSFL1CQ9UNZ2 370 aaKnown RBP17.07■□□□□ 0.32
SHMT2-228ENST00000557302 HDAC5Q9UQL6 1122 aa17.07■□□□□ 0.32
SHMT2-228ENST00000557302 SBF1O95248 1867 aa17.06■□□□□ 0.32
SHMT2-228ENST00000557302 IARSP41252 1262 aaKnown RBP17.06■□□□□ 0.32
SHMT2-228ENST00000557302 CCDC57Q2TAC2 916 aa17.06■□□□□ 0.32
SHMT2-228ENST00000557302 RABL6Q3YEC7 729 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-228ENST00000557302 TMEM57Q8N5G2 664 aa17.06■□□□□ 0.32
SHMT2-228ENST00000557302 MPHOSPH8Q99549 860 aa17.06■□□□□ 0.32
SHMT2-228ENST00000557302 RTFDC1Q9BY42 306 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-228ENST00000557302 LRRC37AA6NMS7 1700 aa17.06■□□□□ 0.32
SHMT2-228ENST00000557302 GNAI3P08754 354 aa17.05■□□□□ 0.32
SHMT2-228ENST00000557302 GPSM2P81274 684 aa17.05■□□□□ 0.32
SHMT2-228ENST00000557302 TAF7LQ5H9L4 462 aa17.05■□□□□ 0.32
SHMT2-228ENST00000557302 ANKRD44Q8N8A2 993 aa17.05■□□□□ 0.32
SHMT2-228ENST00000557302 MEIS3Q99687 375 aa17.05■□□□□ 0.32
SHMT2-228ENST00000557302 ANKIB1Q9P2G1 1089 aa17.05■□□□□ 0.32
SHMT2-228ENST00000557302 MS4A1P11836 297 aa17.04■□□□□ 0.32
SHMT2-228ENST00000557302 VPS33BQ9H267 617 aa17.04■□□□□ 0.32
SHMT2-228ENST00000557302 PODXL2Q9NZ53 605 aa17.04■□□□□ 0.32
SHMT2-228ENST00000557302 XDHP47989 1333 aa17.03■□□□□ 0.32
SHMT2-228ENST00000557302 C6orf229H3BNL8 230 aa17.03■□□□□ 0.32
SHMT2-228ENST00000557302 PPIP5K2O43314 1243 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms