RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 SUSD4Q5VX71 490 aa29.43■■■□□ 2.3
SIX4-203ENST00000556952 SETDB2Q96T68 719 aa29.43■■■□□ 2.3
SIX4-203ENST00000556952 ANKRD31Q8N7Z5 1873 aa29.42■■■□□ 2.3
SIX4-203ENST00000556952 ZBTB47Q9UFB7 747 aaPredicted RBP29.42■■■□□ 2.3
SIX4-203ENST00000556952 EXOC6BQ9Y2D4 811 aa29.42■■■□□ 2.3
SIX4-203ENST00000556952 SH3TC1Q8TE82 1336 aa29.41■■■□□ 2.3
SIX4-203ENST00000556952 NOP58Q9Y2X3 529 aaKnown RBP29.41■■■□□ 2.3
SIX4-203ENST00000556952 CD2APQ9Y5K6 639 aa29.41■■■□□ 2.3
SIX4-203ENST00000556952 GOLGB1Q14789 3259 aaKnown RBP29.4■■■□□ 2.3
SIX4-203ENST00000556952 RAB11FIP3O75154 756 aa29.4■■■□□ 2.3
SIX4-203ENST00000556952 NTSR2O95665 410 aa29.4■■■□□ 2.3
SIX4-203ENST00000556952 HSP90B1P14625 803 aaKnown RBP29.4■■■□□ 2.3
SIX4-203ENST00000556952 LMBR1LQ6UX01 489 aa29.4■■■□□ 2.3
SIX4-203ENST00000556952 SKAP1Q86WV1 359 aa29.4■■■□□ 2.3
SIX4-203ENST00000556952 SURF6O75683 361 aaKnown RBP29.39■■■□□ 2.3
SIX4-203ENST00000556952 IRS4O14654 1257 aaPredicted RBP29.39■■■□□ 2.29
SIX4-203ENST00000556952 LNPKQ9C0E8 428 aa29.39■■■□□ 2.29
SIX4-203ENST00000556952 RGS3P49796 1198 aa29.38■■■□□ 2.29
SIX4-203ENST00000556952 PRR5LQ6MZQ0 368 aa29.37■■■□□ 2.29
SIX4-203ENST00000556952 CCDC24Q8N4L8 307 aa29.37■■■□□ 2.29
SIX4-203ENST00000556952 LRRCC1Q9C099 1032 aa29.37■■■□□ 2.29
SIX4-203ENST00000556952 NYXQ9GZU5 481 aa29.37■■■□□ 2.29
SIX4-203ENST00000556952 FAM177BA6PVY3 158 aa29.36■■■□□ 2.29
SIX4-203ENST00000556952 PDE8AO60658 829 aa29.36■■■□□ 2.29
SIX4-203ENST00000556952 COPRSQ9NQ92 184 aa29.36■■■□□ 2.29
SIX4-203ENST00000556952 CSF1RP07333 972 aa29.35■■■□□ 2.29
SIX4-203ENST00000556952 RFX5P48382 616 aaPredicted RBP29.35■■■□□ 2.29
SIX4-203ENST00000556952 PDE4AP27815 886 aa29.35■■■□□ 2.29
SIX4-203ENST00000556952 CTSWP56202 376 aa29.35■■■□□ 2.29
SIX4-203ENST00000556952 ERC1Q8IUD2 1116 aa29.35■■■□□ 2.29
SIX4-203ENST00000556952 SYNE4Q8N205 404 aa29.35■■■□□ 2.29
SIX4-203ENST00000556952 CHMP3Q9Y3E7 222 aa29.35■■■□□ 2.29
SIX4-203ENST00000556952 BRCA1P38398 1863 aaKnown RBP29.34■■■□□ 2.29
SIX4-203ENST00000556952 NBPF5PQ86XG9 351 aaPredicted RBP29.34■■■□□ 2.29
SIX4-203ENST00000556952 CNBD1Q8NA66 436 aa29.34■■■□□ 2.29
SIX4-203ENST00000556952 KIF1BPQ96EK5 621 aa29.34■■■□□ 2.29
SIX4-203ENST00000556952 COL11A2P13942 1736 aaPredicted RBP29.34■■■□□ 2.29
SIX4-203ENST00000556952 APBB1O00213 710 aa29.33■■■□□ 2.29
SIX4-203ENST00000556952 PA2G4Q9UQ80 394 aaKnown RBP29.33■■■□□ 2.29
SIX4-203ENST00000556952 PTPN12Q05209 780 aaKnown RBP29.32■■■□□ 2.28
SIX4-203ENST00000556952 OS9Q13438 667 aaPredicted RBP29.32■■■□□ 2.28
SIX4-203ENST00000556952 DLEC1Q9Y238 1755 aa29.32■■■□□ 2.28
SIX4-203ENST00000556952 TNRC6CQ9HCJ0 1690 aaKnown RBP29.31■■■□□ 2.28
SIX4-203ENST00000556952 G3BP1Q13283 466 aaKnown RBP eCLIP29.3■■■□□ 2.28
SIX4-203ENST00000556952 TTLL11Q8NHH1 800 aa29.3■■■□□ 2.28
SIX4-203ENST00000556952 RHPN1Q8TCX5 695 aa29.3■■■□□ 2.28
SIX4-203ENST00000556952 CCDC57Q2TAC2 916 aa29.3■■■□□ 2.28
SIX4-203ENST00000556952 UTRNP46939 3433 aa29.29■■■□□ 2.28
SIX4-203ENST00000556952 NPHP1O15259 732 aa29.29■■■□□ 2.28
SIX4-203ENST00000556952 SMARCA5O60264 1052 aaPredicted RBP29.29■■■□□ 2.28
SIX4-203ENST00000556952 TPTE2Q6XPS3 522 aa29.29■■■□□ 2.28
SIX4-203ENST00000556952 NUTM1Q86Y26 1132 aa29.29■■■□□ 2.28
SIX4-203ENST00000556952 ABCC12Q96J65 1359 aa29.28■■■□□ 2.28
SIX4-203ENST00000556952 A0A0G2JLW4 131 aa29.28■■■□□ 2.28
SIX4-203ENST00000556952 DPEP1P16444 411 aa29.28■■■□□ 2.28
SIX4-203ENST00000556952 TGFB2P61812 414 aa29.28■■■□□ 2.28
SIX4-203ENST00000556952 FAM161AQ3B820 660 aa29.28■■■□□ 2.28
SIX4-203ENST00000556952 WWC3Q9ULE0 1092 aa29.28■■■□□ 2.28
SIX4-203ENST00000556952 HCLS1P14317 486 aaPredicted RBP29.27■■■□□ 2.28
SIX4-203ENST00000556952 CHRNA5P30532 468 aa29.27■■■□□ 2.28
SIX4-203ENST00000556952 IFIT5Q13325 482 aaKnown RBP29.27■■■□□ 2.28
SIX4-203ENST00000556952 KLHDC4Q8TBB5 520 aa29.27■■■□□ 2.28
SIX4-203ENST00000556952 FBXO3Q9UK99 471 aa29.27■■■□□ 2.28
SIX4-203ENST00000556952 RTL9Q8NET4 1388 aa29.27■■■□□ 2.28
SIX4-203ENST00000556952 GTF2E1P29083 439 aaPredicted RBP29.26■■■□□ 2.28
SIX4-203ENST00000556952 ST5P78524 1137 aa29.26■■■□□ 2.28
SIX4-203ENST00000556952 ERFEQ4G0M1 354 aa29.26■■■□□ 2.28
SIX4-203ENST00000556952 SLC10A5Q5PT55 438 aa29.26■■■□□ 2.28
SIX4-203ENST00000556952 SIL1Q9H173 461 aa29.26■■■□□ 2.27
SIX4-203ENST00000556952 BRIP1Q9BX63 1249 aa29.25■■■□□ 2.27
SIX4-203ENST00000556952 GREM2Q9H772 168 aa29.25■■■□□ 2.27
SIX4-203ENST00000556952 RIC1Q4ADV7 1423 aa29.25■■■□□ 2.27
SIX4-203ENST00000556952 KCNA3P22001 575 aa29.24■■■□□ 2.27
SIX4-203ENST00000556952 CCDC152Q4G0S7 254 aa29.24■■■□□ 2.27
SIX4-203ENST00000556952 CACNA1SQ13698 1873 aa29.24■■■□□ 2.27
SIX4-203ENST00000556952 ANKRD18BA2A2Z9 1011 aa29.23■■■□□ 2.27
SIX4-203ENST00000556952 CIAO1O76071 339 aa29.23■■■□□ 2.27
SIX4-203ENST00000556952 ITGA6P23229 1130 aa29.23■■■□□ 2.27
SIX4-203ENST00000556952 SASH1O94885 1247 aa29.22■■■□□ 2.27
SIX4-203ENST00000556952 TAF7LQ5H9L4 462 aa29.22■■■□□ 2.27
SIX4-203ENST00000556952 PLEKHM2Q8IWE5 1019 aa29.22■■■□□ 2.27
SIX4-203ENST00000556952 IL1RAPL2Q9NP60 686 aa29.22■■■□□ 2.27
SIX4-203ENST00000556952 CLASRPQ8N2M8 674 aaKnown RBP29.22■■■□□ 2.27
SIX4-203ENST00000556952 CCDC85AQ96PX6 553 aaPredicted RBP29.22■■■□□ 2.27
SIX4-203ENST00000556952 EYA2O00167 538 aa29.21■■■□□ 2.27
SIX4-203ENST00000556952 IL15P40933 162 aaPredicted RBP29.21■■■□□ 2.27
SIX4-203ENST00000556952 SF3B3Q15393 1217 aaKnown RBP29.21■■■□□ 2.27
SIX4-203ENST00000556952 C2CD5Q86YS7 1000 aa29.21■■■□□ 2.27
SIX4-203ENST00000556952 C16orf71Q8IYS4 520 aaPredicted RBP29.21■■■□□ 2.27
SIX4-203ENST00000556952 SALL3Q9BXA9 1300 aa29.2■■■□□ 2.27
SIX4-203ENST00000556952 PDE6BP35913 854 aa29.19■■■□□ 2.26
SIX4-203ENST00000556952 ZNF594Q96JF6 807 aaPredicted RBP29.19■■■□□ 2.26
SIX4-203ENST00000556952 SPEF2Q9C093 1822 aa29.19■■■□□ 2.26
SIX4-203ENST00000556952 YBX3P16989 372 aaKnown RBP eCLIP29.18■■■□□ 2.26
SIX4-203ENST00000556952 ATG9AQ7Z3C6 839 aa29.18■■■□□ 2.26
SIX4-203ENST00000556952 OSBPL3Q9H4L5 887 aa29.18■■■□□ 2.26
SIX4-203ENST00000556952 ARFGEF1Q9Y6D6 1849 aa29.18■■■□□ 2.26
SIX4-203ENST00000556952 OTUD7AQ8TE49 926 aaPredicted RBP29.18■■■□□ 2.26
SIX4-203ENST00000556952 NLRP3Q96P20 1036 aa29.18■■■□□ 2.26
SIX4-203ENST00000556952 H0YIN7 160 aa29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms