RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 JDP2Q8WYK2 163 aa9.44□□□□□ -0.9
SCFD1-222ENST00000556768 SH3TC1Q8TE82 1336 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 NTSR2O95665 410 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 PSEN1P49768 467 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 FSTL1Q12841 308 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 SLC10A5Q5PT55 438 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 NLRP10Q86W26 655 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 RBM46Q8TBY0 533 aaKnown RBP9.43□□□□□ -0.9
SCFD1-222ENST00000556768 C7orf43Q8WVR3 580 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 CRAMP1Q96RY5 1269 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 STK31Q9BXU1 1019 aa9.43□□□□□ -0.9
SCFD1-222ENST00000556768 TSPYL2Q9H2G4 693 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-222ENST00000556768 VIRMAQ69YN4 1812 aaKnown RBP9.43□□□□□ -0.9
SCFD1-222ENST00000556768 BBOX1O75936 387 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 APLP1P51693 650 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 DDX46Q7L014 1031 aaKnown RBP9.42□□□□□ -0.9
SCFD1-222ENST00000556768 WWC1Q8IX03 1113 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 NRXN2Q9P2S2 1712 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 SCN7AQ01118 1682 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 IQCA1LA6NCM1 817 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 TCERG1O14776 1098 aaKnown RBP9.42□□□□□ -0.9
SCFD1-222ENST00000556768 CCDC184Q52MB2 194 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 SMC1BQ8NDV3 1235 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 FBXO22Q8NEZ5 403 aa9.42□□□□□ -0.9
SCFD1-222ENST00000556768 PPEF1O14829 653 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-222ENST00000556768 HCLS1P14317 486 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-222ENST00000556768 FAM9BQ8IZU0 186 aa9.41□□□□□ -0.9
SCFD1-222ENST00000556768 SYNE4Q8N205 404 aa9.41□□□□□ -0.9
SCFD1-222ENST00000556768 PSMD1Q99460 953 aa9.41□□□□□ -0.9
SCFD1-222ENST00000556768 ZNF277Q9NRM2 450 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-222ENST00000556768 SALL2Q9Y467 1007 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-222ENST00000556768 IL16Q14005 1332 aa9.41□□□□□ -0.9
SCFD1-222ENST00000556768 ATP5J2-PTCD1G3V325 749 aa9.4□□□□□ -0.9
SCFD1-222ENST00000556768 PRELPP51888 382 aa9.4□□□□□ -0.9
SCFD1-222ENST00000556768 TRIM28Q13263 835 aaKnown RBP9.4□□□□□ -0.9
SCFD1-222ENST00000556768 C8orf58Q8NAV2 365 aa9.4□□□□□ -0.9
SCFD1-222ENST00000556768 KIAA1551Q9HCM1 1747 aa9.4□□□□□ -0.9
SCFD1-222ENST00000556768 ABCC12Q96J65 1359 aa9.4□□□□□ -0.9
SCFD1-222ENST00000556768 IARSP41252 1262 aaKnown RBP9.4□□□□□ -0.91
SCFD1-222ENST00000556768 EIF6P56537 245 aaKnown RBP9.4□□□□□ -0.91
SCFD1-222ENST00000556768 NEXNQ0ZGT2 675 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 TMC4Q7Z404 712 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 WDR63Q8IWG1 891 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 LARGE2Q8N3Y3 721 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 ZNF579Q8NAF0 562 aaKnown RBP9.4□□□□□ -0.91
SCFD1-222ENST00000556768 SUPT20HQ8NEM7 779 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 FAM89AQ96GI7 184 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 ATP6V0A2Q9Y487 856 aa9.4□□□□□ -0.91
SCFD1-222ENST00000556768 AFDNP55196 1824 aaKnown RBP9.39□□□□□ -0.91
SCFD1-222ENST00000556768 PCNTO95613 3336 aa9.39□□□□□ -0.91
SCFD1-222ENST00000556768 DDNO94850 711 aaPredicted RBP9.39□□□□□ -0.91
SCFD1-222ENST00000556768 TWISTNBQ3B726 338 aaPredicted RBP9.39□□□□□ -0.91
SCFD1-222ENST00000556768 SMYD5Q6GMV2 418 aa9.39□□□□□ -0.91
SCFD1-222ENST00000556768 OLFM4Q6UX06 510 aa9.39□□□□□ -0.91
SCFD1-222ENST00000556768 TSR2Q969E8 191 aaKnown RBP9.39□□□□□ -0.91
SCFD1-222ENST00000556768 VPS33BQ9H267 617 aa9.39□□□□□ -0.91
SCFD1-222ENST00000556768 PHAXQ9H814 394 aaKnown RBP9.39□□□□□ -0.91
SCFD1-222ENST00000556768 KDM3BQ7LBC6 1761 aa9.39□□□□□ -0.91
SCFD1-222ENST00000556768 RIC1Q4ADV7 1423 aa9.39□□□□□ -0.91
SCFD1-222ENST00000556768 RTL5Q5HYW3 569 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-222ENST00000556768 DPP8Q6V1X1 898 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-222ENST00000556768 SP8Q8IXZ3 490 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 CCDC191Q8NCU4 936 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 ISCA1Q9BUE6 129 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 MYH16Q9H6N6 1097 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 DLG5Q8TDM6 1919 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 ARFGEF1Q9Y6D6 1849 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 PITPNM1O00562 1244 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 IRS4O14654 1257 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-222ENST00000556768 GRAPQ13588 217 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 C3orf67Q6ZVT6 689 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 NIM1KQ8IY84 436 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 GPC2Q8N158 579 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 MPNDQ8N594 471 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 ZBTB38Q8NAP3 1195 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-222ENST00000556768 GRAPLQ8TC17 118 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-222ENST00000556768 MYD88Q99836 296 aa9.38□□□□□ -0.91
SCFD1-222ENST00000556768 CWC25Q9NXE8 425 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-222ENST00000556768 ABCC4O15439 1325 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 FZD9O00144 591 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 PPIP5K2O43314 1243 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 LMOD1P29536 600 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-222ENST00000556768 KSR2Q6VAB6 950 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 PNMA8AQ86V59 439 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-222ENST00000556768 TSPYL6Q8N831 410 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 ZNF428Q96B54 188 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 HACL1Q9UJ83 578 aa9.37□□□□□ -0.91
SCFD1-222ENST00000556768 LAMB4A4D0S4 1761 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 BRCA1P38398 1863 aaKnown RBP9.36□□□□□ -0.91
SCFD1-222ENST00000556768 PI4KAP2A4QPH2 592 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 SF3B3Q15393 1217 aaKnown RBP9.36□□□□□ -0.91
SCFD1-222ENST00000556768 CCDC152Q4G0S7 254 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 EFCAB3Q8N7B9 438 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 PI4KAP1Q8N8J0 262 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 L3MBTL3Q96JM7 780 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-222ENST00000556768 METTL22Q9BUU2 404 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-222ENST00000556768 MAP3K2Q9Y2U5 619 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 ARIH1Q9Y4X5 557 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-222ENST00000556768 GJA3Q9Y6H8 435 aa9.36□□□□□ -0.91
SCFD1-222ENST00000556768 BCORQ6W2J9 1755 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms