RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PDZRN3Q9UPQ7 1066 aa13.46□□□□□ -0.25
SCFD1-220ENST00000556486 LTBP1Q14766 1721 aa13.46□□□□□ -0.25
SCFD1-220ENST00000556486 PLCG2P16885 1265 aa13.45□□□□□ -0.26
SCFD1-220ENST00000556486 FKBP4Q02790 459 aaKnown RBP eCLIP13.45□□□□□ -0.26
SCFD1-220ENST00000556486 SOGA3Q5TF21 947 aa13.45□□□□□ -0.26
SCFD1-220ENST00000556486 CYP4F22Q6NT55 531 aa13.45□□□□□ -0.26
SCFD1-220ENST00000556486 ZNF790Q6PG37 636 aa13.45□□□□□ -0.26
SCFD1-220ENST00000556486 NPM2Q86SE8 214 aaKnown RBP13.45□□□□□ -0.26
SCFD1-220ENST00000556486 DZIP3Q86Y13 1208 aaKnown RBP13.45□□□□□ -0.26
SCFD1-220ENST00000556486 C7orf43Q8WVR3 580 aa13.45□□□□□ -0.26
SCFD1-220ENST00000556486 GJA3Q9Y6H8 435 aa13.45□□□□□ -0.26
SCFD1-220ENST00000556486 COL4A5P29400 1685 aa13.44□□□□□ -0.26
SCFD1-220ENST00000556486 PRAMEF22A3QJZ6 481 aa13.44□□□□□ -0.26
SCFD1-220ENST00000556486 AOC2O75106 756 aa13.44□□□□□ -0.26
SCFD1-220ENST00000556486 IL6STP40189 918 aaPredicted RBP13.44□□□□□ -0.26
SCFD1-220ENST00000556486 MAP2K1Q02750 393 aaPredicted RBP13.44□□□□□ -0.26
SCFD1-220ENST00000556486 TEFQ10587 303 aa13.44□□□□□ -0.26
SCFD1-220ENST00000556486 CAPNS2Q96L46 248 aa13.44□□□□□ -0.26
SCFD1-220ENST00000556486 THSD7BQ9C0I4 1608 aa13.43□□□□□ -0.26
SCFD1-220ENST00000556486 TRAF5O00463 557 aa13.43□□□□□ -0.26
SCFD1-220ENST00000556486 CC2D1BQ5T0F9 858 aaKnown RBP13.43□□□□□ -0.26
SCFD1-220ENST00000556486 SYNE4Q8N205 404 aa13.43□□□□□ -0.26
SCFD1-220ENST00000556486 IL17REQ8NFR9 667 aa13.43□□□□□ -0.26
SCFD1-220ENST00000556486 DDX21Q9NR30 783 aaKnown RBP eCLIP13.43□□□□□ -0.26
SCFD1-220ENST00000556486 NPR1P16066 1061 aa13.42□□□□□ -0.26
SCFD1-220ENST00000556486 IARSP41252 1262 aaKnown RBP13.42□□□□□ -0.26
SCFD1-220ENST00000556486 RBM26Q5T8P6 1007 aaKnown RBP13.42□□□□□ -0.26
SCFD1-220ENST00000556486 PNMA8AQ86V59 439 aaPredicted RBP13.42□□□□□ -0.26
SCFD1-220ENST00000556486 GPIHBP1Q8IV16 184 aa13.42□□□□□ -0.26
SCFD1-220ENST00000556486 KRI1Q8N9T8 703 aaKnown RBP13.42□□□□□ -0.26
SCFD1-220ENST00000556486 GAS2L2Q8NHY3 880 aa13.42□□□□□ -0.26
SCFD1-220ENST00000556486 BEGAINQ9BUH8 593 aa13.42□□□□□ -0.26
SCFD1-220ENST00000556486 CEMIPQ8WUJ3 1361 aa13.42□□□□□ -0.26
SCFD1-220ENST00000556486 CASP8AP2Q9UKL3 1982 aa13.41□□□□□ -0.26
SCFD1-220ENST00000556486 MAMSTRQ6ZN01 415 aa13.41□□□□□ -0.26
SCFD1-220ENST00000556486 GPR101Q96P66 508 aaPredicted RBP13.41□□□□□ -0.26
SCFD1-220ENST00000556486 FMNL2Q96PY5 1086 aa13.41□□□□□ -0.26
SCFD1-220ENST00000556486 USP16Q9Y5T5 823 aa13.41□□□□□ -0.26
SCFD1-220ENST00000556486 TRPM7Q96QT4 1865 aa13.41□□□□□ -0.26
SCFD1-220ENST00000556486 GNAT3A8MTJ3 354 aa13.4□□□□□ -0.26
SCFD1-220ENST00000556486 FZD9O00144 591 aa13.4□□□□□ -0.26
SCFD1-220ENST00000556486 TCERG1O14776 1098 aaKnown RBP13.4□□□□□ -0.26
SCFD1-220ENST00000556486 U2SURPO15042 1029 aaKnown RBP13.4□□□□□ -0.26
SCFD1-220ENST00000556486 EPS15P42566 896 aa13.4□□□□□ -0.26
SCFD1-220ENST00000556486 GPC2Q8N158 579 aa13.4□□□□□ -0.26
SCFD1-220ENST00000556486 PDCD7Q8N8D1 485 aaKnown RBP13.4□□□□□ -0.26
SCFD1-220ENST00000556486 TEX13AQ9BXU3 409 aaPredicted RBP13.4□□□□□ -0.26
SCFD1-220ENST00000556486 NIP7Q9Y221 180 aaKnown RBP eCLIP13.4□□□□□ -0.26
SCFD1-220ENST00000556486 MLLT3P42568 568 aaPredicted RBP13.39□□□□□ -0.27
SCFD1-220ENST00000556486 CST9Q5W186 159 aa13.39□□□□□ -0.27
SCFD1-220ENST00000556486 RTKN2Q8IZC4 609 aa13.39□□□□□ -0.27
SCFD1-220ENST00000556486 MCOLN1Q9GZU1 580 aa13.39□□□□□ -0.27
SCFD1-220ENST00000556486 BTBD11A6QL63 1104 aa13.38□□□□□ -0.27
SCFD1-220ENST00000556486 IL27Q8NEV9 243 aa13.38□□□□□ -0.27
SCFD1-220ENST00000556486 JDP2Q8WYK2 163 aa13.38□□□□□ -0.27
SCFD1-220ENST00000556486 LMOD1P29536 600 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-220ENST00000556486 SCNN1DP51172 638 aa13.37□□□□□ -0.27
SCFD1-220ENST00000556486 EIF6P56537 245 aaKnown RBP13.37□□□□□ -0.27
SCFD1-220ENST00000556486 HLFQ16534 295 aa13.37□□□□□ -0.27
SCFD1-220ENST00000556486 NUTM1Q86Y26 1132 aa13.37□□□□□ -0.27
SCFD1-220ENST00000556486 RSPH6AQ9H0K4 717 aa13.37□□□□□ -0.27
SCFD1-220ENST00000556486 ABCC12Q96J65 1359 aa13.36□□□□□ -0.27
SCFD1-220ENST00000556486 KLRG2A4D1S0 409 aaPredicted RBP13.36□□□□□ -0.27
SCFD1-220ENST00000556486 GTF2E1P29083 439 aaPredicted RBP13.36□□□□□ -0.27
SCFD1-220ENST00000556486 ECE1P42892 770 aa13.36□□□□□ -0.27
SCFD1-220ENST00000556486 RGS19P49795 217 aa13.36□□□□□ -0.27
SCFD1-220ENST00000556486 KDM4CQ9H3R0 1056 aa13.36□□□□□ -0.27
SCFD1-220ENST00000556486 ZNF408Q9H9D4 720 aa13.36□□□□□ -0.27
SCFD1-220ENST00000556486 ZNF652Q9Y2D9 606 aa13.36□□□□□ -0.27
SCFD1-220ENST00000556486 NBPF26B4DH59 902 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 DGKZQ13574 1117 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 NBPF10Q6P3W6 841 aaKnown RBP13.35□□□□□ -0.27
SCFD1-220ENST00000556486 TPTE2Q6XPS3 522 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 LARGE2Q8N3Y3 721 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 NGEFQ8N5V2 710 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 NBPF15Q8N660 670 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 PHACTR3Q96KR7 559 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 ZMYND15Q9H091 742 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 TLL2Q9Y6L7 1015 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 SNED1Q8TER0 1413 aa13.35□□□□□ -0.27
SCFD1-220ENST00000556486 CELF2O95319 508 aaKnown RBP13.34□□□□□ -0.27
SCFD1-220ENST00000556486 ALDH1B1P30837 517 aa13.34□□□□□ -0.27
SCFD1-220ENST00000556486 CFAP53Q96M91 514 aa13.34□□□□□ -0.27
SCFD1-220ENST00000556486 GLIS2Q9BZE0 524 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-220ENST00000556486 SCUBE2Q9NQ36 999 aa13.34□□□□□ -0.27
SCFD1-220ENST00000556486 TRIM66O15016 1216 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 PRKAR2BP31323 418 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 CIAPIN1Q6FI81 312 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 CLEC4GQ6UXB4 293 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 DLK2Q6UY11 383 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 MCM10Q7L590 875 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 ZIC5Q96T25 663 aa13.33□□□□□ -0.28
SCFD1-220ENST00000556486 NUP98P52948 1817 aa13.32□□□□□ -0.28
SCFD1-220ENST00000556486 SOX10P56693 466 aa13.32□□□□□ -0.28
SCFD1-220ENST00000556486 DCTN1Q14203 1278 aa13.32□□□□□ -0.28
SCFD1-220ENST00000556486 RPGRQ92834 1020 aaKnown RBP13.32□□□□□ -0.28
SCFD1-220ENST00000556486 PSMD1Q99460 953 aa13.32□□□□□ -0.28
SCFD1-220ENST00000556486 NUDCQ9Y266 331 aa13.32□□□□□ -0.28
SCFD1-220ENST00000556486 HTATSF1O43719 755 aaKnown RBP13.31□□□□□ -0.28
SCFD1-220ENST00000556486 SNRPA1P09661 255 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms