RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 ABCC10Q5T3U5 1492 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 ACEP12821 1306 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 CTNNA2P26232 953 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 KLHL40Q2TBA0 621 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 CLIP2Q9UDT6 1046 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 A2MP01023 1474 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 ADGRF5Q8IZF2 1346 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 TMEM87AQ8NBN3 555 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 UTP14AQ9BVJ6 771 aaKnown RBP12.28□□□□□ -0.44
ACTN1-216ENST00000556083 KDM4AO75164 1064 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 PIP4K2BP78356 416 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 NCBP1Q09161 790 aaKnown RBP12.28□□□□□ -0.44
ACTN1-216ENST00000556083 TDRD12Q587J7 1177 aaKnown RBP12.28□□□□□ -0.44
ACTN1-216ENST00000556083 PRIMPOLQ96LW4 560 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 URB2Q14146 1524 aaKnown RBP12.28□□□□□ -0.44
ACTN1-216ENST00000556083 RHPN1Q8TCX5 695 aa12.28□□□□□ -0.44
ACTN1-216ENST00000556083 KRT13P13646 458 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 PPP2R5BQ15173 497 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 NBPF6Q5VWK0 638 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 CEP128Q6ZU80 1094 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 NBPF5PQ86XG9 351 aaPredicted RBP12.27□□□□□ -0.44
ACTN1-216ENST00000556083 ANKRD44Q8N8A2 993 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 NBPF4Q96M43 638 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 DRC1Q96MC2 740 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 EMILIN1Q9Y6C2 1016 aa12.27□□□□□ -0.44
ACTN1-216ENST00000556083 ZBTB43O43298 467 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 TNPO1Q92973 898 aaKnown RBP12.27□□□□□ -0.45
ACTN1-216ENST00000556083 CCDC77Q9BR77 488 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 EXOC1Q9NV70 894 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 PSMA7O14818 248 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 ATP2B3Q16720 1220 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 SETDB2Q96T68 719 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 C6orf50Q9HD87 102 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 USP25Q9UHP3 1055 aa12.27□□□□□ -0.45
ACTN1-216ENST00000556083 BICDL2A1A5D9 508 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 KIAA1524Q8TCG1 905 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 CENPHQ9H3R5 247 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 KCNG1Q9UIX4 513 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 UQCRHLA0A096LP55 91 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 UQCRHP07919 91 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 GNA11P29992 359 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 ATP8B2P98198 1209 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 MCMDC2Q4G0Z9 681 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 C6orf163Q5TEZ5 329 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 TPTE2Q6XPS3 522 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 SELENOOQ9BVL4 669 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 IMPG2Q9BZV3 1241 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 SYCE3A1L190 88 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 DKC1O60832 514 aaKnown RBP eCLIP12.26□□□□□ -0.45
ACTN1-216ENST00000556083 CCDC175P0C221 793 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 GRIPAP1Q4V328 841 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 SYCP3Q8IZU3 236 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 CCDC8Q9H0W5 538 aaPredicted RBP12.26□□□□□ -0.45
ACTN1-216ENST00000556083 SHANK2Q9UPX8 1470 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 RASAL2Q9UJF2 1139 aa12.26□□□□□ -0.45
ACTN1-216ENST00000556083 UHRF1BP1Q6BDS2 1440 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 GRM8O00222 908 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 BRAPQ7Z569 592 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 SNX21Q969T3 373 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 PI4KAP2A4QPH2 592 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 ATP2A1O14983 1001 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 FERP16591 822 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 TTLL12Q14166 644 aaPredicted RBP12.25□□□□□ -0.45
ACTN1-216ENST00000556083 PI4KAP1Q8N8J0 262 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 DCAF5Q96JK2 942 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 MAST3O60307 1309 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 INSRP06213 1382 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 NUCB1Q02818 461 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 PARP10Q53GL7 1025 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 UBE3BQ7Z3V4 1068 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 RBM28Q9NW13 759 aaKnown RBP12.25□□□□□ -0.45
ACTN1-216ENST00000556083 SSX2IPQ9Y2D8 614 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 NPC1L1Q9UHC9 1359 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 GPATCH8Q9UKJ3 1502 aaKnown RBP12.25□□□□□ -0.45
ACTN1-216ENST00000556083 BIVM-ERCC5R4GMW8 1640 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 ZNF165P49910 485 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 C19orf44Q9H6X5 657 aa12.25□□□□□ -0.45
ACTN1-216ENST00000556083 HMGB1P1B2RPK0 211 aaPredicted RBP12.24□□□□□ -0.45
ACTN1-216ENST00000556083 KRT83P78385 493 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 RTN1Q16799 776 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 CCDC155Q8N6L0 562 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 UBA5Q9GZZ9 404 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 MBIPQ9NS73 344 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 PIK3C2GO75747 1445 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 URI1O94763 535 aaPredicted RBP12.24□□□□□ -0.45
ACTN1-216ENST00000556083 TNNI2P48788 182 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 FERMT3Q86UX7 667 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 INTS4Q96HW7 963 aaKnown RBP12.24□□□□□ -0.45
ACTN1-216ENST00000556083 GJB2P29033 226 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 RBM26Q5T8P6 1007 aaKnown RBP12.24□□□□□ -0.45
ACTN1-216ENST00000556083 CALCOCO1Q9P1Z2 691 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 ARHGEF12Q9NZN5 1544 aa12.24□□□□□ -0.45
ACTN1-216ENST00000556083 TSPY3P0CV98 308 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TSPY8P0CW00 308 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 IDEP14735 1019 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 SYKP43405 635 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 KIAA0753Q2KHM9 967 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 SPECC1Q5M775 1068 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 IKBKGQ9Y6K9 419 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 UNC13AQ9UPW8 1703 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms