RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 RTL5Q5HYW3 569 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-207ENST00000555854 GRAPLQ8TC17 118 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-207ENST00000555854 CELF1Q92879 486 aaKnown RBP12.05□□□□□ -0.48
VIPAS39-207ENST00000555854 RTFDC1Q9BY42 306 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-207ENST00000555854 FANCIQ9NVI1 1328 aa12.05□□□□□ -0.48
VIPAS39-207ENST00000555854 MYCNP04198 464 aaPredicted RBP12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 SCNN1DP51172 638 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 GOLGA2Q08379 1002 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 SF3B3Q15393 1217 aaKnown RBP12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 AOC3Q16853 763 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 CHADLQ6NUI6 762 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 KLRG1Q96E93 195 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 MYD88Q99836 296 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 IL16Q14005 1332 aa12.04□□□□□ -0.48
VIPAS39-207ENST00000555854 IQCA1LA6NCM1 817 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 ANP32CO43423 234 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 POLA2Q14181 598 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 G2E3Q7L622 706 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 GPC2Q8N158 579 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 LARGE2Q8N3Y3 721 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 PASKQ96RG2 1323 aa12.03□□□□□ -0.48
VIPAS39-207ENST00000555854 IRS4O14654 1257 aaPredicted RBP12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 PPIP5K2O43314 1243 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 BBOX1O75936 387 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 IGKV5-2P06315 115 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 GRIPAP1Q4V328 841 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 CCDC30Q5VVM6 783 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 DDX46Q7L014 1031 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 RIC3Q7Z5B4 369 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 LDHDQ86WU2 507 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 SP8Q8IXZ3 490 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 JMYQ8N9B5 988 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 HACL1Q9UJ83 578 aa12.02□□□□□ -0.49
VIPAS39-207ENST00000555854 YDJCA8MPS7 323 aa12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 EPHX2P34913 555 aa12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 KIAA2012Q0VF49 1180 aa12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 TWISTNBQ3B726 338 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 DPP8Q6V1X1 898 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 ZBTB38Q8NAP3 1195 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 JDP2Q8WYK2 163 aa12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 JARID2Q92833 1246 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 METTL22Q9BUU2 404 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 SEC31BQ9NQW1 1179 aa12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 MAP3K2Q9Y2U5 619 aa12.01□□□□□ -0.49
VIPAS39-207ENST00000555854 PI4KAP2A4QPH2 592 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 ITGBL1O95965 494 aaPredicted RBP12□□□□□ -0.49
VIPAS39-207ENST00000555854 PCCAP05165 728 aaPredicted RBP12□□□□□ -0.49
VIPAS39-207ENST00000555854 EPS15P42566 896 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 NIM1KQ8IY84 436 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 MPNDQ8N594 471 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 PI4KAP1Q8N8J0 262 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 CCDC191Q8NCU4 936 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 SALL2Q9Y467 1007 aaPredicted RBP12□□□□□ -0.49
VIPAS39-207ENST00000555854 GJA3Q9Y6H8 435 aa12□□□□□ -0.49
VIPAS39-207ENST00000555854 SCN9AQ15858 1988 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 EIF6P56537 245 aaKnown RBP11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 GPSM2P81274 684 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 CXCL9Q07325 125 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 EAPPQ56P03 285 aaPredicted RBP11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 KSR2Q6VAB6 950 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 GPR101Q96P66 508 aaPredicted RBP11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 CWC25Q9NXE8 425 aaPredicted RBP11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 POLLQ9UGP5 575 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 ZNF521Q96K83 1311 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 CDHR2Q9BYE9 1310 aa11.99□□□□□ -0.49
VIPAS39-207ENST00000555854 MYH3P11055 1940 aa11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 SPEF2Q9C093 1822 aa11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 CWF19L2Q2TBE0 894 aaKnown RBP11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 MAP1SQ66K74 1059 aaPredicted RBP11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 TMC4Q7Z404 712 aa11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 CCDC85AQ96PX6 553 aaPredicted RBP11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 VPS33BQ9H267 617 aa11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 ZNRF3Q9ULT6 936 aa11.98□□□□□ -0.49
VIPAS39-207ENST00000555854 RTL9Q8NET4 1388 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 SHTN1A0MZ66 631 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 NEURL1BA8MQ27 555 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 PDE8AO60658 829 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 VAMP4O75379 141 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 DDX58O95786 925 aaKnown RBP11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 EXOSC9Q06265 439 aaKnown RBP11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 FMR1Q06787 632 aaKnown RBP eCLIP11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 FLIIQ13045 1269 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 WDR63Q8IWG1 891 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 SUPT20HQ8NEM7 779 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 GPRC5DQ9NZD1 345 aa11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 ZNF646O15015 1829 aaPredicted RBP11.97□□□□□ -0.49
VIPAS39-207ENST00000555854 CNTNAP1P78357 1384 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 RAD17O75943 681 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 GMPSP49915 693 aaPredicted RBP11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 CASP7P55210 303 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 CTSWP56202 376 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 FAM9BQ8IZU0 186 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 TBC1D16Q8TBP0 767 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 STK31Q9BXU1 1019 aa11.96□□□□□ -0.49
VIPAS39-207ENST00000555854 CACNA1FO60840 1977 aa11.96□□□□□ -0.5
VIPAS39-207ENST00000555854 RPS8P62241 208 aaKnown RBP11.95□□□□□ -0.5
VIPAS39-207ENST00000555854 CIAPIN1Q6FI81 312 aa11.95□□□□□ -0.5
VIPAS39-207ENST00000555854 PNMA8AQ86V59 439 aaPredicted RBP11.95□□□□□ -0.5
VIPAS39-207ENST00000555854 TRPM4Q8TD43 1214 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms