RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 PDGFDQ9GZP0 370 aaPredicted RBP12.65□□□□□ -0.38
SRP54-208ENST00000555557 GREM2Q9H772 168 aa12.65□□□□□ -0.38
SRP54-208ENST00000555557 NOP58Q9Y2X3 529 aaKnown RBP12.65□□□□□ -0.38
SRP54-208ENST00000555557 OS9Q13438 667 aaPredicted RBP12.64□□□□□ -0.39
SRP54-208ENST00000555557 MSL1Q68DK7 614 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 TPTE2Q6XPS3 522 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 C3orf67Q6ZVT6 689 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 NYXQ9GZU5 481 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 IL1RAPL2Q9NP60 686 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 NPHP1O15259 732 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 CCDC57Q2TAC2 916 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 RHPN1Q8TCX5 695 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 LRRCC1Q9C099 1032 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 COPRSQ9NQ92 184 aa12.64□□□□□ -0.39
SRP54-208ENST00000555557 ZBTB47Q9UFB7 747 aaPredicted RBP12.64□□□□□ -0.39
SRP54-208ENST00000555557 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.64□□□□□ -0.39
SRP54-208ENST00000555557 CARMIL3Q8ND23 1372 aa12.63□□□□□ -0.39
SRP54-208ENST00000555557 ABCC12Q96J65 1359 aa12.63□□□□□ -0.39
SRP54-208ENST00000555557 ITGA6P23229 1130 aa12.63□□□□□ -0.39
SRP54-208ENST00000555557 DDR1Q08345 913 aa12.63□□□□□ -0.39
SRP54-208ENST00000555557 G3BP1Q13283 466 aaKnown RBP eCLIP12.63□□□□□ -0.391e-6■■□□□ 11.8
SRP54-208ENST00000555557 OTUD7AQ8TE49 926 aaPredicted RBP12.63□□□□□ -0.39
SRP54-208ENST00000555557 RAB11FIP3O75154 756 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 SASH1O94885 1247 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 SERPINB2P05120 415 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 IFIT5Q13325 482 aaKnown RBP12.62□□□□□ -0.39
SRP54-208ENST00000555557 NLGN1Q8N2Q7 840 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 PUS3Q9BZE2 481 aaKnown RBP12.62□□□□□ -0.39
SRP54-208ENST00000555557 TUBGCP6Q96RT7 1819 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 POLRMTO00411 1230 aaKnown RBP12.62□□□□□ -0.39
SRP54-208ENST00000555557 LRRC24Q50LG9 513 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 HSP90AB4PQ58FF6 505 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 SLC10A5Q5PT55 438 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 PRR5LQ6MZQ0 368 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 CNBD1Q8NA66 436 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 SEC31BQ9NQW1 1179 aa12.62□□□□□ -0.39
SRP54-208ENST00000555557 TAF7LQ5H9L4 462 aa12.61□□□□□ -0.39
SRP54-208ENST00000555557 KIF1BPQ96EK5 621 aa12.61□□□□□ -0.39
SRP54-208ENST00000555557 ANKRD18BA2A2Z9 1011 aa12.6□□□□□ -0.39
SRP54-208ENST00000555557 HSP90B1P14625 803 aaKnown RBP12.6□□□□□ -0.39
SRP54-208ENST00000555557 CCDC152Q4G0S7 254 aa12.6□□□□□ -0.39
SRP54-208ENST00000555557 MMP10P09238 476 aa12.6□□□□□ -0.39
SRP54-208ENST00000555557 ATG9AQ7Z3C6 839 aa12.6□□□□□ -0.39
SRP54-208ENST00000555557 PLEKHM2Q8IWE5 1019 aa12.6□□□□□ -0.39
SRP54-208ENST00000555557 NLRP3Q96P20 1036 aa12.6□□□□□ -0.39
SRP54-208ENST00000555557 EYA2O00167 538 aa12.59□□□□□ -0.39
SRP54-208ENST00000555557 TFCP2Q12800 502 aa12.59□□□□□ -0.39
SRP54-208ENST00000555557 SF3B3Q15393 1217 aaKnown RBP12.59□□□□□ -0.39
SRP54-208ENST00000555557 ERC1Q8IUD2 1116 aa12.59□□□□□ -0.39
SRP54-208ENST00000555557 COL24A1Q17RW2 1714 aa12.59□□□□□ -0.39
SRP54-208ENST00000555557 TSHZ3Q63HK5 1081 aa12.58□□□□□ -0.39
SRP54-208ENST00000555557 LDHAL6AQ6ZMR3 332 aa12.58□□□□□ -0.39
SRP54-208ENST00000555557 DDX60Q8IY21 1712 aaKnown RBP12.58□□□□□ -0.4
SRP54-208ENST00000555557 ST5P78524 1137 aa12.58□□□□□ -0.4
SRP54-208ENST00000555557 CLASRPQ8N2M8 674 aaKnown RBP12.58□□□□□ -0.4
SRP54-208ENST00000555557 EAF2Q96CJ1 260 aaPredicted RBP12.58□□□□□ -0.4
SRP54-208ENST00000555557 PSDA5PKW4 1024 aaPredicted RBP12.57□□□□□ -0.4
SRP54-208ENST00000555557 IL15P40933 162 aaPredicted RBP12.57□□□□□ -0.4
SRP54-208ENST00000555557 CCDC8Q9H0W5 538 aaPredicted RBP12.57□□□□□ -0.4
SRP54-208ENST00000555557 CNNM1Q9NRU3 951 aa12.57□□□□□ -0.4
SRP54-208ENST00000555557 PARP3Q9Y6F1 533 aa12.57□□□□□ -0.4
SRP54-208ENST00000555557 CIAO1O76071 339 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 AACSQ86V21 672 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 CELF1Q92879 486 aaKnown RBP12.56□□□□□ -0.4
SRP54-208ENST00000555557 RIPOR2Q9Y4F9 1068 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 PDE1AP54750 535 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 R3HDM1Q15032 1099 aaKnown RBP12.56□□□□□ -0.4
SRP54-208ENST00000555557 MPHOSPH8Q99549 860 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 TLR7Q9NYK1 1049 aaKnown RBP12.56□□□□□ -0.4
SRP54-208ENST00000555557 SALL3Q9BXA9 1300 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 MYH3P11055 1940 aa12.56□□□□□ -0.4
SRP54-208ENST00000555557 COL4A1P02462 1669 aa12.55□□□□□ -0.4
SRP54-208ENST00000555557 IFIT2P09913 472 aaKnown RBP12.55□□□□□ -0.4
SRP54-208ENST00000555557 MX1P20591 662 aa12.55□□□□□ -0.4
SRP54-208ENST00000555557 IGHMBP2P38935 993 aaKnown RBP12.55□□□□□ -0.4
SRP54-208ENST00000555557 TIMM10P62072 90 aa12.55□□□□□ -0.4
SRP54-208ENST00000555557 HELBQ8NG08 1087 aaPredicted RBP12.55□□□□□ -0.4
SRP54-208ENST00000555557 CEP126Q9P2H0 1117 aa12.55□□□□□ -0.4
SRP54-208ENST00000555557 RTL9Q8NET4 1388 aa12.55□□□□□ -0.4
SRP54-208ENST00000555557 TNNI3KQ59H18 835 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 METTL24Q5JXM2 366 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 ANKRD18AQ8IVF6 992 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 CDC5LQ99459 802 aaKnown RBP12.54□□□□□ -0.4
SRP54-208ENST00000555557 ANP32EQ9BTT0 268 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 FBXO3Q9UK99 471 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 FPGT-TNNI3KV9GXZ4 949 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 TNRC6CQ9HCJ0 1690 aaKnown RBP12.54□□□□□ -0.4
SRP54-208ENST00000555557 ZBTB7AO95365 584 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 GSPT1P15170 499 aaKnown RBP12.54□□□□□ -0.4
SRP54-208ENST00000555557 DDX46Q7L014 1031 aaKnown RBP12.54□□□□□ -0.4
SRP54-208ENST00000555557 NEUROD6Q96NK8 337 aa12.54□□□□□ -0.4
SRP54-208ENST00000555557 LAMB2P55268 1798 aa12.53□□□□□ -0.4
SRP54-208ENST00000555557 TAF5LO75529 589 aa12.53□□□□□ -0.4
SRP54-208ENST00000555557 RPS8P62241 208 aaKnown RBP12.53□□□□□ -0.4
SRP54-208ENST00000555557 SLC51AQ86UW1 340 aa12.53□□□□□ -0.4
SRP54-208ENST00000555557 DBNLQ9UJU6 430 aaKnown RBP12.53□□□□□ -0.4
SRP54-208ENST00000555557 SNAP23O00161 211 aa12.52□□□□□ -0.4
SRP54-208ENST00000555557 CRY2Q49AN0 593 aa12.52□□□□□ -0.4
SRP54-208ENST00000555557 RPGRQ92834 1020 aaKnown RBP12.52□□□□□ -0.4
SRP54-208ENST00000555557 DBNDD2Q9BQY9 259 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms