RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RFX5P48382 616 aaPredicted RBP13.44□□□□□ -0.26
TDP1-211ENST00000555178 TPTE2Q6XPS3 522 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 CNBD1Q8NA66 436 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 RWDD1Q9H446 243 aaPredicted RBP13.44□□□□□ -0.26
TDP1-211ENST00000555178 SRGAP3O43295 1099 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 CSF1RP07333 972 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 GTF2E1P29083 439 aaPredicted RBP13.44□□□□□ -0.26
TDP1-211ENST00000555178 CTSWP56202 376 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 PLA2G12BQ9BX93 195 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 CHMP3Q9Y3E7 222 aa13.44□□□□□ -0.26
TDP1-211ENST00000555178 PDE8AO60658 829 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 POLA2Q14181 598 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 SLC10A5Q5PT55 438 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 SGIP1Q9BQI5 828 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 MTX1Q13505 466 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 RPAP2Q8IXW5 612 aaPredicted RBP13.43□□□□□ -0.26
TDP1-211ENST00000555178 SSH3Q8TE77 659 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 PARP3Q9Y6F1 533 aa13.43□□□□□ -0.26
TDP1-211ENST00000555178 KIAA1551Q9HCM1 1747 aa13.42□□□□□ -0.26
TDP1-211ENST00000555178 PTGER2P43116 358 aa13.42□□□□□ -0.26
TDP1-211ENST00000555178 PUS3Q9BZE2 481 aaKnown RBP13.42□□□□□ -0.26
TDP1-211ENST00000555178 NYXQ9GZU5 481 aa13.42□□□□□ -0.26
TDP1-211ENST00000555178 EXOC6BQ9Y2D4 811 aa13.42□□□□□ -0.26
TDP1-211ENST00000555178 APBB1O00213 710 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 SOCS7O14512 581 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 PTPN12Q05209 780 aaKnown RBP13.41□□□□□ -0.26
TDP1-211ENST00000555178 BCL11AQ9H165 835 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 SIL1Q9H173 461 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 KIF13BQ9NQT8 1826 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 NPHP1O15259 732 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 SLC16A10Q8TF71 515 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 MTFR1LQ9H019 292 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 A0A1B0GUL6 1792 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 UTRNP46939 3433 aa13.41□□□□□ -0.26
TDP1-211ENST00000555178 ITGA6P23229 1130 aa13.4□□□□□ -0.26
TDP1-211ENST00000555178 LRRC24Q50LG9 513 aa13.4□□□□□ -0.26
TDP1-211ENST00000555178 SMC5Q8IY18 1101 aa13.4□□□□□ -0.26
TDP1-211ENST00000555178 WTIPA6NIX2 430 aaPredicted RBP13.4□□□□□ -0.26
TDP1-211ENST00000555178 SMARCA5O60264 1052 aaPredicted RBP13.4□□□□□ -0.26
TDP1-211ENST00000555178 CHRNA5P30532 468 aa13.4□□□□□ -0.26
TDP1-211ENST00000555178 CELF1Q92879 486 aaKnown RBP13.4□□□□□ -0.26
TDP1-211ENST00000555178 PDZRN3Q9UPQ7 1066 aa13.4□□□□□ -0.26
TDP1-211ENST00000555178 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
TDP1-211ENST00000555178 SF3B3Q15393 1217 aaKnown RBP13.39□□□□□ -0.27
TDP1-211ENST00000555178 DCTPP1Q9H773 170 aa13.39□□□□□ -0.27
TDP1-211ENST00000555178 HMMRO75330 724 aa13.38□□□□□ -0.27
TDP1-211ENST00000555178 NLRP3Q96P20 1036 aa13.38□□□□□ -0.27
TDP1-211ENST00000555178 WWC3Q9ULE0 1092 aa13.38□□□□□ -0.27
TDP1-211ENST00000555178 SURF6O75683 361 aaKnown RBP13.37□□□□□ -0.27
TDP1-211ENST00000555178 ST5P78524 1137 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 ATG9AQ7Z3C6 839 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 LNPKQ9C0E8 428 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 C10orf71Q711Q0 1435 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 DLEC1Q9Y238 1755 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 KLRG2A4D1S0 409 aaPredicted RBP13.37□□□□□ -0.27
TDP1-211ENST00000555178 SNAP23O00161 211 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 SASH1O94885 1247 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 RGS3P49796 1198 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 CRY2Q49AN0 593 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 OLFM4Q6UX06 510 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 C16orf71Q8IYS4 520 aaPredicted RBP13.37□□□□□ -0.27
TDP1-211ENST00000555178 LRP5O75197 1615 aa13.37□□□□□ -0.27
TDP1-211ENST00000555178 PDE4AP27815 886 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 ANKRD45Q5TZF3 282 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 GCC1Q96CN9 775 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 BRIP1Q9BX63 1249 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 RIC1Q4ADV7 1423 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 BRCA1P38398 1863 aaKnown RBP13.36□□□□□ -0.27
TDP1-211ENST00000555178 NUCB1Q02818 461 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 IFIT5Q13325 482 aaKnown RBP13.36□□□□□ -0.27
TDP1-211ENST00000555178 CCDC57Q2TAC2 916 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 CCDC152Q4G0S7 254 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 HELBQ8NG08 1087 aaPredicted RBP13.36□□□□□ -0.27
TDP1-211ENST00000555178 OTUD7AQ8TE49 926 aaPredicted RBP13.36□□□□□ -0.27
TDP1-211ENST00000555178 COPRSQ9NQ92 184 aa13.36□□□□□ -0.27
TDP1-211ENST00000555178 A0A0G2JLW4 131 aa13.35□□□□□ -0.27
TDP1-211ENST00000555178 SRGNP10124 158 aa13.35□□□□□ -0.27
TDP1-211ENST00000555178 IL1RAPL2Q9NP60 686 aa13.35□□□□□ -0.27
TDP1-211ENST00000555178 NOP58Q9Y2X3 529 aaKnown RBP13.35□□□□□ -0.27
TDP1-211ENST00000555178 ANKRD18BA2A2Z9 1011 aa13.35□□□□□ -0.27
TDP1-211ENST00000555178 KCNA3P22001 575 aa13.35□□□□□ -0.27
TDP1-211ENST00000555178 PPP1R1BQ9UD71 204 aaPredicted RBP13.35□□□□□ -0.27
TDP1-211ENST00000555178 HDAC5Q9UQL6 1122 aa13.35□□□□□ -0.27
TDP1-211ENST00000555178 RTL9Q8NET4 1388 aa13.34□□□□□ -0.27
TDP1-211ENST00000555178 CHD1LQ86WJ1 897 aa13.34□□□□□ -0.27
TDP1-211ENST00000555178 C2CD5Q86YS7 1000 aa13.34□□□□□ -0.27
TDP1-211ENST00000555178 KLHL34Q8N239 644 aa13.34□□□□□ -0.27
TDP1-211ENST00000555178 RIPOR2Q9Y4F9 1068 aa13.34□□□□□ -0.27
TDP1-211ENST00000555178 DPEP1P16444 411 aa13.33□□□□□ -0.27
TDP1-211ENST00000555178 TFCP2Q12800 502 aa13.33□□□□□ -0.27
TDP1-211ENST00000555178 EYA2O00167 538 aa13.33□□□□□ -0.28
TDP1-211ENST00000555178 TAF5LO75529 589 aa13.33□□□□□ -0.28
TDP1-211ENST00000555178 LDHAL6AQ6ZMR3 332 aa13.33□□□□□ -0.28
TDP1-211ENST00000555178 NLGN2Q8NFZ4 835 aa13.33□□□□□ -0.28
TDP1-211ENST00000555178 POLD1P28340 1107 aa13.32□□□□□ -0.28
TDP1-211ENST00000555178 DDX46Q7L014 1031 aaKnown RBP13.32□□□□□ -0.28
TDP1-211ENST00000555178 RHPN1Q8TCX5 695 aa13.32□□□□□ -0.28
TDP1-211ENST00000555178 RPGRQ92834 1020 aaKnown RBP13.32□□□□□ -0.28
TDP1-211ENST00000555178 ZNF219Q9P2Y4 722 aaPredicted RBP13.32□□□□□ -0.28
TDP1-211ENST00000555178 HOXA10P31260 410 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms