RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 PGAP2Q9UHJ9 254 aa14.27□□□□□ -0.13
SHMT2-216ENST00000554975 DLG5Q8TDM6 1919 aa14.27□□□□□ -0.13
SHMT2-216ENST00000554975 PPEF1O14829 653 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-216ENST00000554975 PRPF38BQ5VTL8 546 aaKnown RBP14.26□□□□□ -0.13
SHMT2-216ENST00000554975 RPGRQ92834 1020 aaKnown RBP14.26□□□□□ -0.13
SHMT2-216ENST00000554975 KDM3BQ7LBC6 1761 aa14.26□□□□□ -0.13
SHMT2-216ENST00000554975 FAM155AB1AL88 458 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-216ENST00000554975 GPTP24298 496 aa14.25□□□□□ -0.13
SHMT2-216ENST00000554975 PRKAR2BP31323 418 aa14.25□□□□□ -0.13
SHMT2-216ENST00000554975 NOGQ13253 232 aa14.25□□□□□ -0.13
SHMT2-216ENST00000554975 MCM10Q7L590 875 aa14.25□□□□□ -0.13
SHMT2-216ENST00000554975 ANKRD36CQ5JPF3 1778 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 E9PSI1 815 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 HUNKP57058 714 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 DCTN1Q14203 1278 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 SUSD4Q5VX71 490 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 CRAMP1Q96RY5 1269 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 NYXQ9GZU5 481 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 ZNRF3Q9ULT6 936 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 DUOX1Q9NRD9 1551 aa14.24□□□□□ -0.13
SHMT2-216ENST00000554975 RAD17O75943 681 aa14.23□□□□□ -0.13
SHMT2-216ENST00000554975 TTLL7Q6ZT98 887 aa14.23□□□□□ -0.13
SHMT2-216ENST00000554975 USP48Q86UV5 1035 aa14.23□□□□□ -0.13
SHMT2-216ENST00000554975 RBM17Q96I25 401 aaKnown RBP14.23□□□□□ -0.13
SHMT2-216ENST00000554975 RSPH6AQ9H0K4 717 aa14.23□□□□□ -0.13
SHMT2-216ENST00000554975 MAP3K15Q6ZN16 1313 aa14.22□□□□□ -0.13
SHMT2-216ENST00000554975 NTSR2O95665 410 aa14.22□□□□□ -0.13
SHMT2-216ENST00000554975 KIF23Q02241 960 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-216ENST00000554975 CDC37L1Q7L3B6 337 aa14.22□□□□□ -0.13
SHMT2-216ENST00000554975 IBTKQ9P2D0 1353 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-216ENST00000554975 TRPA1O75762 1119 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 NEFMP07197 916 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 GRIPAP1Q4V328 841 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 RGMBQ6NW40 437 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 ZC3H15Q8WU90 426 aaKnown RBP14.21□□□□□ -0.13
SHMT2-216ENST00000554975 RTFDC1Q9BY42 306 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-216ENST00000554975 RNF186Q9NXI6 227 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 MIS18AQ9NYP9 233 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 ATP6V0A2Q9Y487 856 aa14.21□□□□□ -0.13
SHMT2-216ENST00000554975 ABCC4O15439 1325 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 CDHR2Q9BYE9 1310 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 YDJCA8MPS7 323 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 ERVV-1B6SEH8 477 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 EGFRP00533 1210 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 DUSP27Q5VZP5 1158 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 BCL2L13Q9BXK5 485 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 ZBTB3Q9H5J0 574 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 SAGE1Q9NXZ1 904 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 CNOT7Q9UIV1 285 aaKnown RBP14.2□□□□□ -0.14
SHMT2-216ENST00000554975 SALL2Q9Y467 1007 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-216ENST00000554975 LRRC37AA6NMS7 1700 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 SCN9AQ15858 1988 aa14.2□□□□□ -0.14
SHMT2-216ENST00000554975 SLFN5Q08AF3 891 aa14.19□□□□□ -0.14
SHMT2-216ENST00000554975 SAMD7Q7Z3H4 446 aa14.19□□□□□ -0.14
SHMT2-216ENST00000554975 ZNF34Q8IZ26 560 aa14.19□□□□□ -0.14
SHMT2-216ENST00000554975 ZBTB12Q9Y330 459 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-216ENST00000554975 MKI67P46013 3256 aaKnown RBP14.19□□□□□ -0.14
SHMT2-216ENST00000554975 COL4A1P02462 1669 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 ADM5C9JUS6 153 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 KIAA2012Q0VF49 1180 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 MICALL2Q8IY33 904 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 RUNDC1Q96C34 613 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 CDCA7LQ96GN5 454 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 VPS33BQ9H267 617 aa14.18□□□□□ -0.14
SHMT2-216ENST00000554975 GBA2Q9HCG7 927 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-216ENST00000554975 RRP7AQ9Y3A4 280 aaKnown RBP14.18□□□□□ -0.14
SHMT2-216ENST00000554975 MYL6BP14649 208 aa14.17□□□□□ -0.14
SHMT2-216ENST00000554975 CCDC27Q2M243 656 aa14.17□□□□□ -0.14
SHMT2-216ENST00000554975 TBC1D10BQ4KMP7 808 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-216ENST00000554975 CTU1Q7Z7A3 348 aaKnown RBP14.17□□□□□ -0.14
SHMT2-216ENST00000554975 RTF1Q92541 710 aaKnown RBP14.17□□□□□ -0.14
SHMT2-216ENST00000554975 CSRNP1Q96S65 589 aa14.17□□□□□ -0.14
SHMT2-216ENST00000554975 HPS5Q9UPZ3 1129 aa14.17□□□□□ -0.14
SHMT2-216ENST00000554975 SLC10A3P09131 477 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 MS4A1P11836 297 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 ZNF157P51786 506 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-216ENST00000554975 TNIP1Q15025 636 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 DPP8Q6V1X1 898 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-216ENST00000554975 KIF6Q6ZMV9 814 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 KRT26Q7Z3Y9 468 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 TRMT2AQ8IZ69 625 aaKnown RBP14.16□□□□□ -0.14
SHMT2-216ENST00000554975 MPNDQ8N594 471 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 SUPT20HQ8NEM7 779 aa14.16□□□□□ -0.14
SHMT2-216ENST00000554975 PNNQ9H307 717 aaKnown RBP14.16□□□□□ -0.14
SHMT2-216ENST00000554975 DDX60Q8IY21 1712 aaKnown RBP14.15□□□□□ -0.14
SHMT2-216ENST00000554975 APAF1O14727 1248 aa14.15□□□□□ -0.14
SHMT2-216ENST00000554975 AAMPQ13685 434 aa14.15□□□□□ -0.14
SHMT2-216ENST00000554975 TAF7Q15545 349 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-216ENST00000554975 EXOC6Q8TAG9 804 aa14.15□□□□□ -0.14
SHMT2-216ENST00000554975 NLRP3Q96P20 1036 aa14.15□□□□□ -0.14
SHMT2-216ENST00000554975 ASTN2O75129 1339 aaPredicted RBP14.15□□□□□ -0.15
SHMT2-216ENST00000554975 MAPK8IP3Q9UPT6 1336 aa14.15□□□□□ -0.15
SHMT2-216ENST00000554975 H7C1D1 291 aa14.14□□□□□ -0.15
SHMT2-216ENST00000554975 PSMD14O00487 310 aa14.14□□□□□ -0.15
SHMT2-216ENST00000554975 GIGYF2Q6Y7W6 1299 aaKnown RBP14.14□□□□□ -0.15
SHMT2-216ENST00000554975 ERICH6Q7L0X2 663 aa14.14□□□□□ -0.15
SHMT2-216ENST00000554975 SP8Q8IXZ3 490 aa14.14□□□□□ -0.15
SHMT2-216ENST00000554975 C2orf69Q8N8R5 385 aa14.14□□□□□ -0.15
SHMT2-216ENST00000554975 CCDC102AQ96A19 550 aa14.14□□□□□ -0.15
SHMT2-216ENST00000554975 KCNQ5Q9NR82 932 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms