RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 NUTM1Q86Y26 1132 aa17.82■□□□□ 0.44
SHOX2-206ENST00000554685 PARP3Q9Y6F1 533 aa17.82■□□□□ 0.44
SHOX2-206ENST00000554685 LAMB2P55268 1798 aa17.81■□□□□ 0.44
SHOX2-206ENST00000554685 POLRMTO00411 1230 aaKnown RBP17.81■□□□□ 0.44
SHOX2-206ENST00000554685 HCLS1P14317 486 aaPredicted RBP17.81■□□□□ 0.44
SHOX2-206ENST00000554685 IFIT5Q13325 482 aaKnown RBP17.81■□□□□ 0.44
SHOX2-206ENST00000554685 ERC1Q8IUD2 1116 aa17.81■□□□□ 0.44
SHOX2-206ENST00000554685 SYNE4Q8N205 404 aa17.81■□□□□ 0.44
SHOX2-206ENST00000554685 TTLL11Q8NHH1 800 aa17.81■□□□□ 0.44
SHOX2-206ENST00000554685 NLRP3Q96P20 1036 aa17.81■□□□□ 0.44
SHOX2-206ENST00000554685 NOP58Q9Y2X3 529 aaKnown RBP17.81■□□□□ 0.44
SHOX2-206ENST00000554685 RTL9Q8NET4 1388 aa17.8■□□□□ 0.44
SHOX2-206ENST00000554685 SURF6O75683 361 aaKnown RBP17.8■□□□□ 0.44
SHOX2-206ENST00000554685 COPRSQ9NQ92 184 aa17.8■□□□□ 0.44
SHOX2-206ENST00000554685 FBXO3Q9UK99 471 aa17.8■□□□□ 0.44
SHOX2-206ENST00000554685 ANKRD18BA2A2Z9 1011 aa17.79■□□□□ 0.44
SHOX2-206ENST00000554685 MMP10P09238 476 aa17.79■□□□□ 0.44
SHOX2-206ENST00000554685 DDR1Q08345 913 aa17.79■□□□□ 0.44
SHOX2-206ENST00000554685 G3BP1Q13283 466 aaKnown RBP eCLIP17.79■□□□□ 0.44
SHOX2-206ENST00000554685 OS9Q13438 667 aaPredicted RBP17.79■□□□□ 0.44
SHOX2-206ENST00000554685 SF3B3Q15393 1217 aaKnown RBP17.79■□□□□ 0.44
SHOX2-206ENST00000554685 TAF7LQ5H9L4 462 aa17.79■□□□□ 0.44
SHOX2-206ENST00000554685 PRR5LQ6MZQ0 368 aa17.79■□□□□ 0.44
SHOX2-206ENST00000554685 ABCC12Q96J65 1359 aa17.79■□□□□ 0.44
SHOX2-206ENST00000554685 RFX5P48382 616 aaPredicted RBP17.78■□□□□ 0.44
SHOX2-206ENST00000554685 NUCB1Q02818 461 aa17.78■□□□□ 0.44
SHOX2-206ENST00000554685 FAM161AQ3B820 660 aa17.78■□□□□ 0.44
SHOX2-206ENST00000554685 EXOC6BQ9Y2D4 811 aa17.78■□□□□ 0.44
SHOX2-206ENST00000554685 ITGA6P23229 1130 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 PTPN12Q05209 780 aaKnown RBP17.77■□□□□ 0.44
SHOX2-206ENST00000554685 ANKRD45Q5TZF3 282 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 MSL1Q68DK7 614 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 CHD1LQ86WJ1 897 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 KIF1BPQ96EK5 621 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 CDC5LQ99459 802 aaKnown RBP17.77■□□□□ 0.44
SHOX2-206ENST00000554685 LRRCC1Q9C099 1032 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 PDZRN3Q9UPQ7 1066 aa17.77■□□□□ 0.44
SHOX2-206ENST00000554685 DDX60Q8IY21 1712 aaKnown RBP17.77■□□□□ 0.44
SHOX2-206ENST00000554685 MYH3P11055 1940 aa17.76■□□□□ 0.43
SHOX2-206ENST00000554685 PELP1Q8IZL8 1130 aaKnown RBP17.76■□□□□ 0.43
SHOX2-206ENST00000554685 GREM2Q9H772 168 aa17.76■□□□□ 0.43
SHOX2-206ENST00000554685 CIAO1O76071 339 aa17.75■□□□□ 0.43
SHOX2-206ENST00000554685 PA2G4Q9UQ80 394 aaKnown RBP17.75■□□□□ 0.43
SHOX2-206ENST00000554685 IGHMBP2P38935 993 aaKnown RBP17.74■□□□□ 0.43
SHOX2-206ENST00000554685 IL15P40933 162 aaPredicted RBP17.74■□□□□ 0.43
SHOX2-206ENST00000554685 CCDC85AQ96PX6 553 aaPredicted RBP17.74■□□□□ 0.43
SHOX2-206ENST00000554685 BRIP1Q9BX63 1249 aa17.74■□□□□ 0.43
SHOX2-206ENST00000554685 NRXN2Q9P2S2 1712 aa17.74■□□□□ 0.43
SHOX2-206ENST00000554685 EYA2O00167 538 aa17.73■□□□□ 0.43
SHOX2-206ENST00000554685 SOCS7O14512 581 aa17.73■□□□□ 0.43
SHOX2-206ENST00000554685 R3HDM1Q15032 1099 aaKnown RBP17.73■□□□□ 0.43
SHOX2-206ENST00000554685 DDX46Q7L014 1031 aaKnown RBP17.73■□□□□ 0.43
SHOX2-206ENST00000554685 RHPN1Q8TCX5 695 aa17.73■□□□□ 0.43
SHOX2-206ENST00000554685 MTFR1LQ9H019 292 aa17.73■□□□□ 0.43
SHOX2-206ENST00000554685 SIL1Q9H173 461 aa17.73■□□□□ 0.43
SHOX2-206ENST00000554685 APBB1O00213 710 aa17.72■□□□□ 0.43
SHOX2-206ENST00000554685 PDE6BP35913 854 aa17.72■□□□□ 0.43
SHOX2-206ENST00000554685 LDHAL6AQ6ZMR3 332 aa17.72■□□□□ 0.43
SHOX2-206ENST00000554685 CLASRPQ8N2M8 674 aaKnown RBP17.72■□□□□ 0.43
SHOX2-206ENST00000554685 KLHDC4Q8TBB5 520 aa17.72■□□□□ 0.43
SHOX2-206ENST00000554685 RPGRQ92834 1020 aaKnown RBP17.72■□□□□ 0.43
SHOX2-206ENST00000554685 MPHOSPH8Q99549 860 aa17.72■□□□□ 0.43
SHOX2-206ENST00000554685 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
SHOX2-206ENST00000554685 POLD1P28340 1107 aa17.71■□□□□ 0.43
SHOX2-206ENST00000554685 CRY2Q49AN0 593 aa17.71■□□□□ 0.43
SHOX2-206ENST00000554685 ANKRD18AQ8IVF6 992 aa17.71■□□□□ 0.43
SHOX2-206ENST00000554685 CCDC24Q8N4L8 307 aa17.71■□□□□ 0.43
SHOX2-206ENST00000554685 CNNM1Q9NRU3 951 aa17.71■□□□□ 0.43
SHOX2-206ENST00000554685 KLRG2A4D1S0 409 aaPredicted RBP17.7■□□□□ 0.42
SHOX2-206ENST00000554685 C3orf67Q6ZVT6 689 aa17.7■□□□□ 0.42
SHOX2-206ENST00000554685 RBM17Q96I25 401 aaKnown RBP17.7■□□□□ 0.42
SHOX2-206ENST00000554685 ZNF594Q96JF6 807 aaPredicted RBP17.7■□□□□ 0.42
SHOX2-206ENST00000554685 PDGFDQ9GZP0 370 aaPredicted RBP17.7■□□□□ 0.42
SHOX2-206ENST00000554685 CASZ1Q86V15 1759 aa17.7■□□□□ 0.42
SHOX2-206ENST00000554685 LRP5O75197 1615 aa17.69■□□□□ 0.42
SHOX2-206ENST00000554685 SEC31BQ9NQW1 1179 aa17.69■□□□□ 0.42
SHOX2-206ENST00000554685 CEP126Q9P2H0 1117 aa17.69■□□□□ 0.42
SHOX2-206ENST00000554685 MROH5Q6ZUA9 1318 aa17.69■□□□□ 0.42
SHOX2-206ENST00000554685 TNRC6CQ9HCJ0 1690 aaKnown RBP17.68■□□□□ 0.42
SHOX2-206ENST00000554685 SASH1O94885 1247 aa17.68■□□□□ 0.42
SHOX2-206ENST00000554685 ATG9AQ7Z3C6 839 aa17.68■□□□□ 0.42
SHOX2-206ENST00000554685 GPR108Q9NPR9 543 aa17.68■□□□□ 0.42
SHOX2-206ENST00000554685 AKAP2Q9Y2D5 859 aa17.68■□□□□ 0.42
SHOX2-206ENST00000554685 SMARCA5O60264 1052 aaPredicted RBP17.67■□□□□ 0.42
SHOX2-206ENST00000554685 ZBTB7AO95365 584 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 HOXA10P31260 410 aaPredicted RBP17.67■□□□□ 0.42
SHOX2-206ENST00000554685 RGS3P49796 1198 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 RPS8P62241 208 aaKnown RBP17.67■□□□□ 0.42
SHOX2-206ENST00000554685 GRAPQ13588 217 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 LRRC24Q50LG9 513 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 METTL24Q5JXM2 366 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 TMC4Q7Z404 712 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 GRAPLQ8TC17 118 aaPredicted RBP17.67■□□□□ 0.42
SHOX2-206ENST00000554685 CRAMP1Q96RY5 1269 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 IL1RAPL2Q9NP60 686 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 BSDC1Q9NW68 430 aaPredicted RBP17.67■□□□□ 0.42
SHOX2-206ENST00000554685 RIPOR2Q9Y4F9 1068 aa17.67■□□□□ 0.42
SHOX2-206ENST00000554685 IFIT2P09913 472 aaKnown RBP17.66■□□□□ 0.42
SHOX2-206ENST00000554685 NPR1P16066 1061 aa17.66■□□□□ 0.42
SHOX2-206ENST00000554685 TFCP2Q12800 502 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms