RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 MIER1Q8N108 512 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 GRAPLQ8TC17 118 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-213ENST00000554600 ATP6V0A2Q9Y487 856 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 LRRC37AA6NMS7 1700 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 WDR90Q96KV7 1748 aa13.61□□□□□ -0.23
SHMT2-213ENST00000554600 SCN4AP35499 1836 aa13.6□□□□□ -0.23
SHMT2-213ENST00000554600 IGKV5-2P06315 115 aa13.6□□□□□ -0.23
SHMT2-213ENST00000554600 GRIPAP1Q4V328 841 aa13.6□□□□□ -0.23
SHMT2-213ENST00000554600 DNAAF4Q8WXU2 420 aa13.6□□□□□ -0.23
SHMT2-213ENST00000554600 JDP2Q8WYK2 163 aa13.6□□□□□ -0.23
SHMT2-213ENST00000554600 CCDC85AQ96PX6 553 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-213ENST00000554600 PSMD1Q99460 953 aa13.6□□□□□ -0.23
SHMT2-213ENST00000554600 SF3B3Q15393 1217 aaKnown RBP13.59□□□□□ -0.23
SHMT2-213ENST00000554600 DPP8Q6V1X1 898 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-213ENST00000554600 SP8Q8IXZ3 490 aa13.59□□□□□ -0.23
SHMT2-213ENST00000554600 LARGE2Q8N3Y3 721 aa13.59□□□□□ -0.23
SHMT2-213ENST00000554600 NEURL1BA8MQ27 555 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 F6X3S4 739 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 PPIP5K2O43314 1243 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 PDE8AO60658 829 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 TOMM70O94826 608 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 DDNO94850 711 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-213ENST00000554600 VEGFAP15692 232 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-213ENST00000554600 SLFN5Q08AF3 891 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 CCDC152Q4G0S7 254 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 UBE3BQ7Z3V4 1068 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 TMC4Q7Z404 712 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 MPNDQ8N594 471 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 CELF1Q92879 486 aaKnown RBP13.58□□□□□ -0.24
SHMT2-213ENST00000554600 CDCA7LQ96GN5 454 aa13.58□□□□□ -0.24
SHMT2-213ENST00000554600 SNED1Q8TER0 1413 aa13.57□□□□□ -0.24
SHMT2-213ENST00000554600 COL4A1P02462 1669 aa13.57□□□□□ -0.24
SHMT2-213ENST00000554600 SUPT20HQ8NEM7 779 aa13.57□□□□□ -0.24
SHMT2-213ENST00000554600 SEC31BQ9NQW1 1179 aa13.57□□□□□ -0.24
SHMT2-213ENST00000554600 CDHR2Q9BYE9 1310 aa13.57□□□□□ -0.24
SHMT2-213ENST00000554600 EIF6P56537 245 aaKnown RBP13.56□□□□□ -0.24
SHMT2-213ENST00000554600 RPS8P62241 208 aaKnown RBP13.56□□□□□ -0.24
SHMT2-213ENST00000554600 AOC3Q16853 763 aa13.56□□□□□ -0.24
SHMT2-213ENST00000554600 SLC4A10Q6U841 1118 aa13.56□□□□□ -0.24
SHMT2-213ENST00000554600 NIM1KQ8IY84 436 aa13.56□□□□□ -0.24
SHMT2-213ENST00000554600 LINS1Q8NG48 757 aa13.56□□□□□ -0.24
SHMT2-213ENST00000554600 ZNF541Q9H0D2 1346 aa13.56□□□□□ -0.24
SHMT2-213ENST00000554600 CTSWP56202 376 aa13.55□□□□□ -0.24
SHMT2-213ENST00000554600 GCKRQ14397 625 aa13.55□□□□□ -0.24
SHMT2-213ENST00000554600 RBM46Q8TBY0 533 aaKnown RBP13.55□□□□□ -0.24
SHMT2-213ENST00000554600 NSFL1CQ9UNZ2 370 aaKnown RBP13.55□□□□□ -0.24
SHMT2-213ENST00000554600 GJA3Q9Y6H8 435 aa13.55□□□□□ -0.24
SHMT2-213ENST00000554600 COL4A5P29400 1685 aa13.55□□□□□ -0.24
SHMT2-213ENST00000554600 C6orf229H3BNL8 230 aa13.54□□□□□ -0.24
SHMT2-213ENST00000554600 DNAJC5GQ8N7S2 189 aa13.54□□□□□ -0.24
SHMT2-213ENST00000554600 BCL2L13Q9BXK5 485 aa13.54□□□□□ -0.24
SHMT2-213ENST00000554600 H7C1W4 665 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 APLP1P51693 650 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 ANKRD18AQ8IVF6 992 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 SSH1Q8WYL5 1049 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 CDC5LQ99459 802 aaKnown RBP13.53□□□□□ -0.24
SHMT2-213ENST00000554600 C9orf78Q9NZ63 289 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-213ENST00000554600 ANKIB1Q9P2G1 1089 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 DUOX1Q9NRD9 1551 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 LTBP1Q14766 1721 aa13.53□□□□□ -0.24
SHMT2-213ENST00000554600 IQCA1LA6NCM1 817 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 FZD9O00144 591 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 RIMBP2O15034 1052 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 GPSM2P81274 684 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 HNRNPUQ00839 825 aaKnown RBP eCLIP13.52□□□□□ -0.25
SHMT2-213ENST00000554600 BEND3Q5T5X7 828 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 MRPL50Q8N5N7 158 aaKnown RBP13.52□□□□□ -0.25
SHMT2-213ENST00000554600 SMC1BQ8NDV3 1235 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 TTLL11Q8NHH1 800 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 RTFDC1Q9BY42 306 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-213ENST00000554600 SRCIN1Q9C0H9 1055 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 GREM2Q9H772 168 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 SMC4Q9NTJ3 1288 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 CHMP3Q9Y3E7 222 aa13.52□□□□□ -0.25
SHMT2-213ENST00000554600 POTECB2RU33 542 aa13.51□□□□□ -0.25
SHMT2-213ENST00000554600 LMOD1P29536 600 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-213ENST00000554600 EAPPQ56P03 285 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-213ENST00000554600 GPC2Q8N158 579 aa13.51□□□□□ -0.25
SHMT2-213ENST00000554600 VPS33BQ9H267 617 aa13.51□□□□□ -0.25
SHMT2-213ENST00000554600 HACL1Q9UJ83 578 aa13.51□□□□□ -0.25
SHMT2-213ENST00000554600 POLR2AP24928 1970 aaKnown RBP13.51□□□□□ -0.25
SHMT2-213ENST00000554600 SCN9AQ15858 1988 aa13.51□□□□□ -0.25
SHMT2-213ENST00000554600 G3V3G9 751 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 GRM8O00222 908 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 UFL1O94874 794 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 KIAA2012Q0VF49 1180 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 FSTL1Q12841 308 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 WASHC4Q2M389 1173 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 DCAF8Q5TAQ9 597 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 L3MBTL3Q96JM7 780 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-213ENST00000554600 GPR101Q96P66 508 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-213ENST00000554600 EYA3Q99504 573 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 ZNRF3Q9ULT6 936 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 CLEC11AQ9Y240 323 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 PSME4Q14997 1843 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 A0A1B0GUL6 1792 aa13.5□□□□□ -0.25
SHMT2-213ENST00000554600 PCNTO95613 3336 aa13.49□□□□□ -0.25
SHMT2-213ENST00000554600 PTPRCP08575 1304 aa13.49□□□□□ -0.25
SHMT2-213ENST00000554600 ALDH1L1O75891 902 aa13.49□□□□□ -0.25
SHMT2-213ENST00000554600 ITGA6P23229 1130 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms