RNA–Protein interactions for RNA: ENST00000554393.2

PTCD2P1-201, Transcript of pentatricopeptide repeat domain 2 pseudogene 1, humanhuman

BASIC

Gene PTCD2P1, Length 1,136 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2P1-201ENST00000554393 TSR2Q969E8 191 aaKnown RBP13.42□□□□□ -0.26
PTCD2P1-201ENST00000554393 DDX58O95786 925 aaKnown RBP13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 HSPA1AP0DMV8 641 aaKnown RBP13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 HSPA1BP0DMV9 641 aaKnown RBP13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 VEGFAP15692 232 aaPredicted RBP13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 FSTL1Q12841 308 aa13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 RIC3Q7Z5B4 369 aa13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 TSPYL6Q8N831 410 aa13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 PHAXQ9H814 394 aaKnown RBP13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 RRAGCQ9HB90 399 aa13.41□□□□□ -0.26
PTCD2P1-201ENST00000554393 TAF1P21675 1872 aa13.4□□□□□ -0.26
PTCD2P1-201ENST00000554393 PPEF1O14829 653 aaPredicted RBP13.4□□□□□ -0.26
PTCD2P1-201ENST00000554393 IARSP41252 1262 aaKnown RBP13.4□□□□□ -0.26
PTCD2P1-201ENST00000554393 TWISTNBQ3B726 338 aaPredicted RBP13.4□□□□□ -0.26
PTCD2P1-201ENST00000554393 FAM161AQ3B820 660 aa13.4□□□□□ -0.26
PTCD2P1-201ENST00000554393 OLFM4Q6UX06 510 aa13.4□□□□□ -0.26
PTCD2P1-201ENST00000554393 ABCC4O15439 1325 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 FANCIQ9NVI1 1328 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 MYH3P11055 1940 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 BBOX1O75936 387 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 HCLS1P14317 486 aaPredicted RBP13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 HSP90B1P14625 803 aaKnown RBP13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 SYNE4Q8N205 404 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 STK31Q9BXU1 1019 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 TMX4Q9H1E5 349 aaPredicted RBP13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 ZNF277Q9NRM2 450 aaPredicted RBP13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 ATP6V0A2Q9Y487 856 aa13.39□□□□□ -0.27
PTCD2P1-201ENST00000554393 ATP5J2-PTCD1G3V325 749 aa13.38□□□□□ -0.27
PTCD2P1-201ENST00000554393 DDX46Q7L014 1031 aaKnown RBP13.38□□□□□ -0.27
PTCD2P1-201ENST00000554393 TMC4Q7Z404 712 aa13.38□□□□□ -0.27
PTCD2P1-201ENST00000554393 FAM9BQ8IZU0 186 aa13.38□□□□□ -0.27
PTCD2P1-201ENST00000554393 CCDC191Q8NCU4 936 aa13.38□□□□□ -0.27
PTCD2P1-201ENST00000554393 GRAPQ13588 217 aa13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 SF3B3Q15393 1217 aaKnown RBP13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 KSR2Q6VAB6 950 aa13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 ZBTB38Q8NAP3 1195 aaPredicted RBP13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 SMC1BQ8NDV3 1235 aa13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 GRAPLQ8TC17 118 aaPredicted RBP13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 FAM89AQ96GI7 184 aa13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 L3MBTL3Q96JM7 780 aaPredicted RBP13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 METTL22Q9BUU2 404 aaPredicted RBP13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 VPS33BQ9H267 617 aa13.37□□□□□ -0.27
PTCD2P1-201ENST00000554393 POTECB2RU33 542 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 FZD9O00144 591 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 SP8Q8IXZ3 490 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 JDP2Q8WYK2 163 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 MYD88Q99836 296 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 MYH16Q9H6N6 1097 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 CWC25Q9NXE8 425 aaPredicted RBP13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 COL4A5P29400 1685 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 LTBP1Q14766 1721 aa13.36□□□□□ -0.27
PTCD2P1-201ENST00000554393 IQCA1LA6NCM1 817 aa13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 IRS4O14654 1257 aaPredicted RBP13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 DDNO94850 711 aaPredicted RBP13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 PCCAP05165 728 aaPredicted RBP13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 SUPT20HQ8NEM7 779 aa13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 RTFDC1Q9BY42 306 aaPredicted RBP13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 MAP3K2Q9Y2U5 619 aa13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 DUOX1Q9NRD9 1551 aa13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 ZNF541Q9H0D2 1346 aa13.35□□□□□ -0.27
PTCD2P1-201ENST00000554393 PI4KAP2A4QPH2 592 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 VAMP4O75379 141 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 NEXNQ0ZGT2 675 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 GPC2Q8N158 579 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 PI4KAP1Q8N8J0 262 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 SALL2Q9Y467 1007 aaPredicted RBP13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 ZNF521Q96K83 1311 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 CDHR2Q9BYE9 1310 aa13.34□□□□□ -0.27
PTCD2P1-201ENST00000554393 ADAMTSL1Q8N6G6 1762 aa13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 TCERG1O14776 1098 aaKnown RBP13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 EXOSC9Q06265 439 aaKnown RBP13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 FLIIQ13045 1269 aa13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 DPP8Q6V1X1 898 aaPredicted RBP13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 MIER1Q8N108 512 aa13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 LARGE2Q8N3Y3 721 aa13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 MPNDQ8N594 471 aa13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 COL4A1P02462 1669 aa13.33□□□□□ -0.28
PTCD2P1-201ENST00000554393 PDE8AO60658 829 aa13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 IGKV5-2P06315 115 aa13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 FXR2P51116 673 aaKnown RBP eCLIP13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 EIF6P56537 245 aaKnown RBP13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 RTL5Q5HYW3 569 aaPredicted RBP13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 G2E3Q7L622 706 aa13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 SLC51AQ86UW1 340 aa13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 PLCD3Q8N3E9 789 aa13.32□□□□□ -0.28
PTCD2P1-201ENST00000554393 PPIP5K2O43314 1243 aa13.31□□□□□ -0.28
PTCD2P1-201ENST00000554393 CCDC152Q4G0S7 254 aa13.31□□□□□ -0.28
PTCD2P1-201ENST00000554393 NIM1KQ8IY84 436 aa13.31□□□□□ -0.28
PTCD2P1-201ENST00000554393 CELF1Q92879 486 aaKnown RBP13.31□□□□□ -0.28
PTCD2P1-201ENST00000554393 ZNF428Q96B54 188 aa13.31□□□□□ -0.28
PTCD2P1-201ENST00000554393 NEURL1BA8MQ27 555 aa13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 CCER2I3L3R5 266 aa13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 RPS8P62241 208 aaKnown RBP13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 KIAA2012Q0VF49 1180 aa13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 FKBP5Q13451 457 aaPredicted RBP13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 AOC3Q16853 763 aa13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 TAF1DQ9H5J8 278 aaPredicted RBP13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 HACL1Q9UJ83 578 aa13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 RTL9Q8NET4 1388 aa13.3□□□□□ -0.28
PTCD2P1-201ENST00000554393 SPEF2Q9C093 1822 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms