RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 NEXNQ0ZGT2 675 aa14.79□□□□□ -0.04
CCDC88C-208ENST00000554165 UBE3BQ7Z3V4 1068 aa14.79□□□□□ -0.04
CCDC88C-208ENST00000554165 RRAGCQ9HB90 399 aa14.79□□□□□ -0.04
CCDC88C-208ENST00000554165 CACNA1FO60840 1977 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 TIAM2Q8IVF5 1701 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 COL4A5P29400 1685 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 GLTPD2A6NH11 291 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 H7C1W4 665 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 BBOX1O75936 387 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 C1QTNF8P60827 252 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 GCKRQ14397 625 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 BEND3Q5T5X7 828 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 LINS1Q8NG48 757 aa14.78□□□□□ -0.04
CCDC88C-208ENST00000554165 DICER1Q9UPY3 1922 aaKnown RBP14.77□□□□□ -0.04
CCDC88C-208ENST00000554165 PDE8AO60658 829 aa14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 IARSP41252 1262 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 CASP7P55210 303 aa14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 HNRNPUQ00839 825 aaKnown RBP eCLIP14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 CC2D2BQ6DHV5 1058 aa14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 SP8Q8IXZ3 490 aa14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 PSMD1Q99460 953 aa14.77□□□□□ -0.05
CCDC88C-208ENST00000554165 CDHR2Q9BYE9 1310 aa14.76□□□□□ -0.05
CCDC88C-208ENST00000554165 ZNF541Q9H0D2 1346 aa14.76□□□□□ -0.05
CCDC88C-208ENST00000554165 POTECB2RU33 542 aa14.76□□□□□ -0.05
CCDC88C-208ENST00000554165 DDNO94850 711 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-208ENST00000554165 SLC4A10Q6U841 1118 aa14.76□□□□□ -0.05
CCDC88C-208ENST00000554165 KDM2BQ8NHM5 1336 aa14.75□□□□□ -0.05
CCDC88C-208ENST00000554165 ZC3H4Q9UPT8 1303 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-208ENST00000554165 CTSWP56202 376 aa14.75□□□□□ -0.05
CCDC88C-208ENST00000554165 RPS8P62241 208 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-208ENST00000554165 TTLL11Q8NHH1 800 aa14.75□□□□□ -0.05
CCDC88C-208ENST00000554165 GPSM2P81274 684 aa14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 AOC3Q16853 763 aa14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 CCDC152Q4G0S7 254 aa14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 DPP8Q6V1X1 898 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 LARGE2Q8N3Y3 721 aa14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 MPNDQ8N594 471 aa14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 GPR101Q96P66 508 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 GREM2Q9H772 168 aa14.74□□□□□ -0.05
CCDC88C-208ENST00000554165 SMC4Q9NTJ3 1288 aa14.73□□□□□ -0.05
CCDC88C-208ENST00000554165 WTIPA6NIX2 430 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 FZD9O00144 591 aa14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 PPIP5K2O43314 1243 aa14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 EPHA10Q5JZY3 1008 aa14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 DPY19L2Q6NUT2 758 aa14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 RTFDC1Q9BY42 306 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 TMX4Q9H1E5 349 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 NSFL1CQ9UNZ2 370 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 DUOX1Q9NRD9 1551 aa14.72□□□□□ -0.05
CCDC88C-208ENST00000554165 HSP90B1P14625 803 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-208ENST00000554165 FOXO4P98177 505 aa14.71□□□□□ -0.05
CCDC88C-208ENST00000554165 FAM161AQ3B820 660 aa14.71□□□□□ -0.05
CCDC88C-208ENST00000554165 SRCIN1Q9C0H9 1055 aa14.71□□□□□ -0.05
CCDC88C-208ENST00000554165 POLLQ9UGP5 575 aa14.71□□□□□ -0.05
CCDC88C-208ENST00000554165 LRRC37AA6NMS7 1700 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 GRM8O00222 908 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 VEGFAP15692 232 aaPredicted RBP14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 RARSP54136 660 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 ALDH1L2Q3SY69 923 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 GRIPAP1Q4V328 841 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 TMC4Q7Z404 712 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 ANKRD18AQ8IVF6 992 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 JDP2Q8WYK2 163 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 PLA2G12BQ9BX93 195 aa14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 NOB1Q9ULX3 412 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-208ENST00000554165 C6orf229H3BNL8 230 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 RIMBP2O15034 1052 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 ALDH1L1O75891 902 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 TOMM70O94826 608 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 CSF1RP07333 972 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 NBPF7P0C2Y1 421 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 POTEIP0CG38 1075 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 POTEJP0CG39 1038 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 ITGA6P23229 1130 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 NIM1KQ8IY84 436 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 GJA3Q9Y6H8 435 aa14.69□□□□□ -0.06
CCDC88C-208ENST00000554165 MYH3P11055 1940 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 KIAA2012Q0VF49 1180 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 LMBR1LQ6UX01 489 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 C16orf71Q8IYS4 520 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 SUPT20HQ8NEM7 779 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 TBC1D16Q8TBP0 767 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 KAZALD1Q96I82 304 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 SUCLG2Q96I99 432 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 C9orf78Q9NZ63 289 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 WDR90Q96KV7 1748 aa14.68□□□□□ -0.06
CCDC88C-208ENST00000554165 PTPRCP08575 1304 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 LTBP1Q14766 1721 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 SPEF2Q9C093 1822 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 YDJCA8MPS7 323 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 BCAR3O75815 825 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 UFL1O94874 794 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 CXCL9Q07325 125 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 DOK7Q18PE1 504 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 L3MBTL3Q96JM7 780 aaPredicted RBP14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 CDC5LQ99459 802 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 KCNQ5Q9NR82 932 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 ANKIB1Q9P2G1 1089 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 MINPP1Q9UNW1 487 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 TNNQ9UQP3 1299 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms