RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 GCKRQ14397 625 aa19.51■□□□□ 0.71
SHMT2-204ENST00000553324 CWF19L2Q2TBE0 894 aaKnown RBP19.51■□□□□ 0.71
SHMT2-204ENST00000553324 C16orf71Q8IYS4 520 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-204ENST00000553324 CDCA7LQ96GN5 454 aa19.51■□□□□ 0.71
SHMT2-204ENST00000553324 ARFGEF2Q9Y6D5 1785 aa19.51■□□□□ 0.71
SHMT2-204ENST00000553324 RPS8P62241 208 aaKnown RBP19.5■□□□□ 0.71
SHMT2-204ENST00000553324 DPP8Q6V1X1 898 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-204ENST00000553324 MPNDQ8N594 471 aa19.5■□□□□ 0.71
SHMT2-204ENST00000553324 RRAGCQ9HB90 399 aa19.5■□□□□ 0.71
SHMT2-204ENST00000553324 NMRK2Q9NPI5 230 aa19.5■□□□□ 0.71
SHMT2-204ENST00000553324 SBF1O95248 1867 aa19.5■□□□□ 0.71
SHMT2-204ENST00000553324 FER1L6Q2WGJ9 1857 aa19.5■□□□□ 0.71
SHMT2-204ENST00000553324 TOMM70O94826 608 aa19.49■□□□□ 0.71
SHMT2-204ENST00000553324 VEGFAP15692 232 aaPredicted RBP19.49■□□□□ 0.71
SHMT2-204ENST00000553324 ALDH1L2Q3SY69 923 aa19.49■□□□□ 0.71
SHMT2-204ENST00000553324 RTFDC1Q9BY42 306 aaPredicted RBP19.49■□□□□ 0.71
SHMT2-204ENST00000553324 BEND3Q5T5X7 828 aa19.48■□□□□ 0.71
SHMT2-204ENST00000553324 MRPL50Q8N5N7 158 aaKnown RBP19.48■□□□□ 0.71
SHMT2-204ENST00000553324 JARID2Q92833 1246 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-204ENST00000553324 CELF1Q92879 486 aaKnown RBP19.48■□□□□ 0.71
SHMT2-204ENST00000553324 CACNA1FO60840 1977 aa19.48■□□□□ 0.71
SHMT2-204ENST00000553324 PTPRCP08575 1304 aa19.48■□□□□ 0.71
SHMT2-204ENST00000553324 F6X3S4 739 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 FZD9O00144 591 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 CTSWP56202 376 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 UBE3BQ7Z3V4 1068 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 LARGE2Q8N3Y3 721 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 PLA2G12BQ9BX93 195 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 SNED1Q8TER0 1413 aa19.47■□□□□ 0.71
SHMT2-204ENST00000553324 TTLL11Q8NHH1 800 aa19.46■□□□□ 0.71
SHMT2-204ENST00000553324 SSH1Q8WYL5 1049 aa19.46■□□□□ 0.71
SHMT2-204ENST00000553324 CDC5LQ99459 802 aaKnown RBP19.46■□□□□ 0.71
SHMT2-204ENST00000553324 ALDH1L1O75891 902 aa19.45■□□□□ 0.7
SHMT2-204ENST00000553324 EIF6P56537 245 aaKnown RBP19.45■□□□□ 0.7
SHMT2-204ENST00000553324 ANKRD18AQ8IVF6 992 aa19.45■□□□□ 0.7
SHMT2-204ENST00000553324 NSFL1CQ9UNZ2 370 aaKnown RBP19.45■□□□□ 0.7
SHMT2-204ENST00000553324 PPIP5K2O43314 1243 aa19.44■□□□□ 0.7
SHMT2-204ENST00000553324 DDNO94850 711 aaPredicted RBP19.44■□□□□ 0.7
SHMT2-204ENST00000553324 SLC4A10Q6U841 1118 aa19.44■□□□□ 0.7
SHMT2-204ENST00000553324 NIM1KQ8IY84 436 aa19.44■□□□□ 0.7
SHMT2-204ENST00000553324 RBM46Q8TBY0 533 aaKnown RBP19.44■□□□□ 0.7
SHMT2-204ENST00000553324 SRCIN1Q9C0H9 1055 aa19.44■□□□□ 0.7
SHMT2-204ENST00000553324 SEC31BQ9NQW1 1179 aa19.44■□□□□ 0.7
SHMT2-204ENST00000553324 CACNA1SQ13698 1873 aa19.43■□□□□ 0.7
SHMT2-204ENST00000553324 IQCA1LA6NCM1 817 aa19.43■□□□□ 0.7
SHMT2-204ENST00000553324 CASP7P55210 303 aa19.43■□□□□ 0.7
SHMT2-204ENST00000553324 HNRNPUQ00839 825 aaKnown RBP eCLIP19.43■□□□□ 0.7
SHMT2-204ENST00000553324 C9orf78Q9NZ63 289 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-204ENST00000553324 GRM8O00222 908 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 CSF1RP07333 972 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 KIAA2012Q0VF49 1180 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 GPC2Q8N158 579 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 L3MBTL3Q96JM7 780 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-204ENST00000553324 CCDC85AQ96PX6 553 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-204ENST00000553324 EYA3Q99504 573 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 SMC4Q9NTJ3 1288 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 RTL9Q8NET4 1388 aa19.42■□□□□ 0.7
SHMT2-204ENST00000553324 BRPF1P55201 1214 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-204ENST00000553324 FSTL1Q12841 308 aa19.41■□□□□ 0.7
SHMT2-204ENST00000553324 AOC3Q16853 763 aa19.41■□□□□ 0.7
SHMT2-204ENST00000553324 WASHC4Q2M389 1173 aa19.41■□□□□ 0.7
SHMT2-204ENST00000553324 GREM2Q9H772 168 aa19.41■□□□□ 0.7
SHMT2-204ENST00000553324 PODXL2Q9NZ53 605 aa19.41■□□□□ 0.7
SHMT2-204ENST00000553324 ZNRF3Q9ULT6 936 aa19.41■□□□□ 0.7
SHMT2-204ENST00000553324 DDX60Q8IY21 1712 aaKnown RBP19.41■□□□□ 0.7
SHMT2-204ENST00000553324 C6orf229H3BNL8 230 aa19.4■□□□□ 0.7
SHMT2-204ENST00000553324 IGHMBP2P38935 993 aaKnown RBP19.4■□□□□ 0.7
SHMT2-204ENST00000553324 BSDC1Q9NW68 430 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-204ENST00000553324 ANKIB1Q9P2G1 1089 aa19.4■□□□□ 0.7
SHMT2-204ENST00000553324 DICER1Q9UPY3 1922 aaKnown RBP19.39■□□□□ 0.7
SHMT2-204ENST00000553324 POTECB2RU33 542 aa19.39■□□□□ 0.69
SHMT2-204ENST00000553324 GPSM2P81274 684 aa19.39■□□□□ 0.69
SHMT2-204ENST00000553324 SLC51AQ86UW1 340 aa19.39■□□□□ 0.69
SHMT2-204ENST00000553324 BCL2L13Q9BXK5 485 aa19.39■□□□□ 0.69
SHMT2-204ENST00000553324 CCDC88AQ3V6T2 1871 aa19.39■□□□□ 0.69
SHMT2-204ENST00000553324 ITGA6P23229 1130 aa19.38■□□□□ 0.69
SHMT2-204ENST00000553324 LAMB2P55268 1798 aa19.38■□□□□ 0.69
SHMT2-204ENST00000553324 SMC1BQ8NDV3 1235 aa19.38■□□□□ 0.69
SHMT2-204ENST00000553324 ZC3H12CQ9C0D7 883 aaKnown RBP19.38■□□□□ 0.69
SHMT2-204ENST00000553324 ZNF541Q9H0D2 1346 aa19.38■□□□□ 0.69
SHMT2-204ENST00000553324 POLLQ9UGP5 575 aa19.38■□□□□ 0.69
SHMT2-204ENST00000553324 GGA1Q9UJY5 639 aa19.38■□□□□ 0.69
SHMT2-204ENST00000553324 ANKRD18BA2A2Z9 1011 aa19.37■□□□□ 0.69
SHMT2-204ENST00000553324 TBC1D16Q8TBP0 767 aa19.37■□□□□ 0.69
SHMT2-204ENST00000553324 MPHOSPH8Q99549 860 aa19.37■□□□□ 0.69
SHMT2-204ENST00000553324 XDHP47989 1333 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 HSPA6P17066 643 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 ATP2B4P23634 1241 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 RARSP54136 660 aaKnown RBP19.36■□□□□ 0.69
SHMT2-204ENST00000553324 FOXO4P98177 505 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 IFIT5Q13325 482 aaKnown RBP19.36■□□□□ 0.69
SHMT2-204ENST00000553324 TNIP1Q15025 636 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 API5Q9BZZ5 524 aaKnown RBP19.36■□□□□ 0.69
SHMT2-204ENST00000553324 HACL1Q9UJ83 578 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 MINPP1Q9UNW1 487 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 GJA3Q9Y6H8 435 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 TIAM2Q8IVF5 1701 aa19.36■□□□□ 0.69
SHMT2-204ENST00000553324 UTYO14607 1347 aa19.35■□□□□ 0.69
SHMT2-204ENST00000553324 LMOD1P29536 600 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-204ENST00000553324 CCDC57Q2TAC2 916 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms