RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	ATP5J2-PTCD1	G3V325	749 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	GRM8	O00222	908 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	GNAQ	P50148	359 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	ZGPAT	Q8N5A5	531 aa	Known RBP	13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	CPLX3	Q8WVH0	158 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	CALCOCO1	Q9P1Z2	691 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	KLF18	A0A0U1RQI7	1052 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	BIN1	O00499	593 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	ZBTB43	O43298	467 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	FAM200A	Q8TCP9	573 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	RBM8A	Q9Y5S9	174 aa	Known RBP	13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	CCDC172	P0C7W6	258 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	PIP4K2B	P78356	416 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	SMC1A	Q14683	1233 aa	Known RBP	13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	ERICH4	A6NGS2	130 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	ESR2	Q92731	530 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	CEP135	Q66GS9	1140 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	MRPS27	Q92552	414 aa	Known RBP	13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	GTPBP4	Q9BZE4	634 aa	Known RBP	13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	SNRK	Q9NRH2	765 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	CHPF2	Q9P2E5	772 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	RBM27	Q9P2N5	1060 aa	Known RBP	13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	UHRF1BP1L	A0JNW5	1464 aa		13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	BMS1	Q14692	1282 aa	Known RBP	13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
SYNE2-208	ENST00000553289	A2M	P01023	1474 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	GSTTP1	A0A1W2PQM5	241 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	HAND2	P61296	217 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	CABP5	Q9NP86	173 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	PKNOX2	Q96KN3	472 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	PLCD4	Q9BRC7	762 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	LARP6	Q9BRS8	491 aa	Known RBP	13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	ARHGEF12	Q9NZN5	1544 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	TCOF1	Q13428	1488 aa	Known RBP	13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	IDE	P14735	1019 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	RAD50	Q92878	1312 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	HCLS1	P14317	486 aa	Predicted RBP	13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	CKAP4	Q07065	602 aa	Known RBP	13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	ERMN	Q8TAM6	284 aa		13.23	□□□□□ -0.29
SYNE2-208	ENST00000553289	ATP2B3	Q16720	1220 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	HOOK3	Q86VS8	718 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	SMARCC1	Q92922	1105 aa	Predicted RBP	13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	DCTPP1	Q9H773	170 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	EXOC1	Q9NV70	894 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	FLT4	P35916	1363 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	N4BP3	O15049	544 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	F13A1	P00488	732 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	ALG1	Q9BT22	464 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	GOLGA6L10	A0A0M3HER8	536 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	WDHD1	O75717	1129 aa	Predicted RBP	13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	TSHZ3	Q63HK5	1081 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	LINS1	Q8NG48	757 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	INTS4	Q96HW7	963 aa	Known RBP	13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	ZNF518A	Q6AHZ1	1483 aa		13.22	□□□□□ -0.29
SYNE2-208	ENST00000553289	C6orf229	H3BNL8	230 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	UBASH3A	P57075	661 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	RTN1	Q16799	776 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	XAGE3	Q8WTP9	111 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	DDX12P	Q92771	950 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	TRIM47	Q96LD4	638 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	CYLC1	P35663	651 aa	Predicted RBP	13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	CCDC113	Q9H0I3	377 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	CALM1	P0DP23	149 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	CALM2	P0DP24	149 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	CALM3	P0DP25	149 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	GNAT2	P19087	354 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	SMC5	Q8IY18	1101 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	DMRT2	Q9Y5R5	561 aa		13.21	□□□□□ -0.29
SYNE2-208	ENST00000553289	CBX1	P83916	185 aa		13.21	□□□□□ -0.3
SYNE2-208	ENST00000553289	GIMAP6	Q6P9H5	292 aa		13.21	□□□□□ -0.3
SYNE2-208	ENST00000553289	CCDC144CP	Q8IYA2	1237 aa		13.21	□□□□□ -0.3
SYNE2-208	ENST00000553289	SCLT1	Q96NL6	688 aa		13.21	□□□□□ -0.3
SYNE2-208	ENST00000553289	ATP10B	O94823	1461 aa		13.21	□□□□□ -0.3
SYNE2-208	ENST00000553289	TEX14	Q8IWB6	1497 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	GNG11	P61952	73 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	C8orf34	Q49A92	452 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	USP48	Q86UV5	1035 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	C8orf58	Q8NAV2	365 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	PTPRK	Q15262	1439 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	TUBB4B	P68371	445 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	HS1BP3	Q53T59	392 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	TCERG1L	Q5VWI1	586 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	ZCRB1	Q8TBF4	217 aa	Known RBP	13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	EIF4A2	Q14240	407 aa	Known RBP	13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	SPECC1	Q5M775	1068 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	IFIT1B	Q5T764	474 aa	Known RBP	13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	COPS6	Q7L5N1	327 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	SRRT	Q9BXP5	876 aa	Known RBP	13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	SHANK2	Q9UPX8	1470 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	TMCO5B	A8MYB1	307 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	TBCA	O75347	108 aa	Known RBP	13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	HLTF	Q14527	1009 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	NECAB1	Q8N987	351 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	PLVAP	Q9BX97	442 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	GOPC	Q9HD26	462 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	RIMS2	Q9UQ26	1411 aa		13.2	□□□□□ -0.3
SYNE2-208	ENST00000553289	USP37	Q86T82	979 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	CNPY2	Q9Y2B0	182 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	ANO6	Q4KMQ2	910 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTR9	Q6PD62	1173 aa		13.19	□□□□□ -0.3

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