RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 HSP90B1P14625 803 aaKnown RBP17.88■□□□□ 0.45
PTCH1-226ENST00000553011 API5Q9BZZ5 524 aaKnown RBP17.88■□□□□ 0.45
PTCH1-226ENST00000553011 NFKBIEO00221 500 aa17.87■□□□□ 0.45
PTCH1-226ENST00000553011 GRM8O00222 908 aa17.87■□□□□ 0.45
PTCH1-226ENST00000553011 PPEF1O14829 653 aaPredicted RBP17.87■□□□□ 0.45
PTCH1-226ENST00000553011 CTSWP56202 376 aa17.87■□□□□ 0.45
PTCH1-226ENST00000553011 FRAT1Q92837 279 aaPredicted RBP17.87■□□□□ 0.45
PTCH1-226ENST00000553011 C9orf78Q9NZ63 289 aaPredicted RBP17.87■□□□□ 0.45
PTCH1-226ENST00000553011 TNNQ9UQP3 1299 aa17.87■□□□□ 0.45
PTCH1-226ENST00000553011 DICER1Q9UPY3 1922 aaKnown RBP17.87■□□□□ 0.45
PTCH1-226ENST00000553011 YY1P25490 414 aa17.86■□□□□ 0.45
PTCH1-226ENST00000553011 GRAPQ13588 217 aa17.86■□□□□ 0.45
PTCH1-226ENST00000553011 CCDC93Q567U6 631 aa17.86■□□□□ 0.45
PTCH1-226ENST00000553011 GRAPLQ8TC17 118 aaPredicted RBP17.86■□□□□ 0.45
PTCH1-226ENST00000553011 ARHGAP45Q92619 1136 aa17.86■□□□□ 0.45
PTCH1-226ENST00000553011 CELF1Q92879 486 aaKnown RBP17.86■□□□□ 0.45
PTCH1-226ENST00000553011 PLA2G12BQ9BX93 195 aa17.86■□□□□ 0.45
PTCH1-226ENST00000553011 SEC31BQ9NQW1 1179 aa17.86■□□□□ 0.45
PTCH1-226ENST00000553011 LRRC37AA6NMS7 1700 aa17.85■□□□□ 0.45
PTCH1-226ENST00000553011 PRELPP51888 382 aa17.85■□□□□ 0.45
PTCH1-226ENST00000553011 CCDC152Q4G0S7 254 aa17.85■□□□□ 0.45
PTCH1-226ENST00000553011 SOGA3Q5TF21 947 aa17.85■□□□□ 0.45
PTCH1-226ENST00000553011 TTLL11Q8NHH1 800 aa17.85■□□□□ 0.45
PTCH1-226ENST00000553011 SNED1Q8TER0 1413 aa17.85■□□□□ 0.45
PTCH1-226ENST00000553011 IPO8O15397 1037 aaKnown RBP17.84■□□□□ 0.45
PTCH1-226ENST00000553011 BBOX1O75936 387 aa17.84■□□□□ 0.45
PTCH1-226ENST00000553011 NBPF7P0C2Y1 421 aaPredicted RBP17.84■□□□□ 0.45
PTCH1-226ENST00000553011 TRIM27P14373 513 aa17.84■□□□□ 0.45
PTCH1-226ENST00000553011 ATF7IPQ6VMQ6 1270 aa17.84■□□□□ 0.45
PTCH1-226ENST00000553011 CCT4P50991 539 aaKnown RBP17.83■□□□□ 0.44
PTCH1-226ENST00000553011 EPHA10Q5JZY3 1008 aa17.83■□□□□ 0.44
PTCH1-226ENST00000553011 C9orf131Q5VYM1 1079 aa17.83■□□□□ 0.44
PTCH1-226ENST00000553011 TAOK3Q9H2K8 898 aa17.83■□□□□ 0.44
PTCH1-226ENST00000553011 GREM2Q9H772 168 aa17.83■□□□□ 0.44
PTCH1-226ENST00000553011 ATP6V0A2Q9Y487 856 aa17.83■□□□□ 0.44
PTCH1-226ENST00000553011 TIAM2Q8IVF5 1701 aa17.83■□□□□ 0.44
PTCH1-226ENST00000553011 UTYO14607 1347 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 FOXO4P98177 505 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 ZKSCAN2Q63HK3 967 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 CLUAP1Q96AJ1 413 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 SUCLG2Q96I99 432 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 USP44Q9H0E7 712 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 RNF181Q9P0P0 153 aa17.82■□□□□ 0.44
PTCH1-226ENST00000553011 RTL9Q8NET4 1388 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 LTBP3Q9NS15 1303 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 CSF1RP07333 972 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 LMNB1P20700 586 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 RPS8P62241 208 aaKnown RBP17.81■□□□□ 0.44
PTCH1-226ENST00000553011 FKBP4Q02790 459 aaKnown RBP eCLIP17.81■□□□□ 0.44
PTCH1-226ENST00000553011 FAM161AQ3B820 660 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 CC2D2BQ6DHV5 1058 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 SP8Q8IXZ3 490 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 RTKN2Q8IZC4 609 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 KAZALD1Q96I82 304 aa17.81■□□□□ 0.44
PTCH1-226ENST00000553011 RCAN3Q9UKA8 241 aa17.8■□□□□ 0.44
PTCH1-226ENST00000553011 INTS3Q68E01 1043 aaKnown RBP17.79■□□□□ 0.44
PTCH1-226ENST00000553011 LMBR1LQ6UX01 489 aa17.79■□□□□ 0.44
PTCH1-226ENST00000553011 TMC4Q7Z404 712 aa17.79■□□□□ 0.44
PTCH1-226ENST00000553011 TMX4Q9H1E5 349 aaPredicted RBP17.79■□□□□ 0.44
PTCH1-226ENST00000553011 ZNF277Q9NRM2 450 aaPredicted RBP17.79■□□□□ 0.44
PTCH1-226ENST00000553011 CHMP3Q9Y3E7 222 aa17.79■□□□□ 0.44
PTCH1-226ENST00000553011 LTBP1Q14766 1721 aa17.78■□□□□ 0.44
PTCH1-226ENST00000553011 ITGA6P23229 1130 aa17.78■□□□□ 0.44
PTCH1-226ENST00000553011 ANKRD18AQ8IVF6 992 aa17.78■□□□□ 0.44
PTCH1-226ENST00000553011 CDC5LQ99459 802 aaKnown RBP17.78■□□□□ 0.44
PTCH1-226ENST00000553011 PSMD1Q99460 953 aa17.78■□□□□ 0.44
PTCH1-226ENST00000553011 DUOX1Q9NRD9 1551 aa17.78■□□□□ 0.44
PTCH1-226ENST00000553011 MPNDQ8N594 471 aa17.77■□□□□ 0.44
PTCH1-226ENST00000553011 TMEM57Q8N5G2 664 aa17.77■□□□□ 0.44
PTCH1-226ENST00000553011 BICC1Q9H694 974 aaKnown RBP17.77■□□□□ 0.44
PTCH1-226ENST00000553011 RLBP1P12271 317 aa17.76■□□□□ 0.43
PTCH1-226ENST00000553011 GRIPAP1Q4V328 841 aa17.76■□□□□ 0.43
PTCH1-226ENST00000553011 DPP8Q6V1X1 898 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-226ENST00000553011 ANKRD44Q8N8A2 993 aa17.76■□□□□ 0.43
PTCH1-226ENST00000553011 MEIS3Q99687 375 aa17.76■□□□□ 0.43
PTCH1-226ENST00000553011 A0A1B0GUL6 1792 aa17.76■□□□□ 0.43
PTCH1-226ENST00000553011 COL4A5P29400 1685 aa17.75■□□□□ 0.43
PTCH1-226ENST00000553011 ANKRD18BA2A2Z9 1011 aa17.75■□□□□ 0.43
PTCH1-226ENST00000553011 UBTFL1P0CB47 393 aaPredicted RBP17.75■□□□□ 0.43
PTCH1-226ENST00000553011 IARSP41252 1262 aaKnown RBP17.75■□□□□ 0.43
PTCH1-226ENST00000553011 GPSM2P81274 684 aa17.75■□□□□ 0.43
PTCH1-226ENST00000553011 IFIT5Q13325 482 aaKnown RBP17.75■□□□□ 0.43
PTCH1-226ENST00000553011 DZIP1LQ8IYY4 767 aaKnown RBP17.75■□□□□ 0.43
PTCH1-226ENST00000553011 IGHMBP2P38935 993 aaKnown RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 RABL6Q3YEC7 729 aaPredicted RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 FTSJ3Q8IY81 847 aaKnown RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 ZNF784Q8NCA9 323 aaPredicted RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 RTFDC1Q9BY42 306 aaPredicted RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 BSDC1Q9NW68 430 aaPredicted RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 NSFL1CQ9UNZ2 370 aaKnown RBP17.74■□□□□ 0.43
PTCH1-226ENST00000553011 PLIN1O60240 522 aa17.73■□□□□ 0.43
PTCH1-226ENST00000553011 ZNF526Q8TF50 670 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-226ENST00000553011 ZNF594Q96JF6 807 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-226ENST00000553011 CCDC57Q2TAC2 916 aa17.72■□□□□ 0.43
PTCH1-226ENST00000553011 PANK1Q8TE04 598 aa17.72■□□□□ 0.43
PTCH1-226ENST00000553011 MPHOSPH8Q99549 860 aa17.72■□□□□ 0.43
PTCH1-226ENST00000553011 POLLQ9UGP5 575 aa17.72■□□□□ 0.43
PTCH1-226ENST00000553011 MINPP1Q9UNW1 487 aa17.72■□□□□ 0.43
PTCH1-226ENST00000553011 LRRFIP2Q9Y608 721 aaKnown RBP17.72■□□□□ 0.43
PTCH1-226ENST00000553011 ZC3H4Q9UPT8 1303 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms