RNA–Protein interactions for RNA: ENST00000551630.1

PTCH1-224, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 539 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-224ENST00000551630 BCS1LQ9Y276 419 aa19.27■□□□□ 0.68
PTCH1-224ENST00000551630 COL4A1P02462 1669 aa19.27■□□□□ 0.67
PTCH1-224ENST00000551630 DALRD3Q5D0E6 543 aaKnown RBP19.26■□□□□ 0.67
PTCH1-224ENST00000551630 TTLL6Q8N841 843 aa19.26■□□□□ 0.67
PTCH1-224ENST00000551630 RBM17Q96I25 401 aaKnown RBP19.26■□□□□ 0.67
PTCH1-224ENST00000551630 KAZALD1Q96I82 304 aa19.26■□□□□ 0.67
PTCH1-224ENST00000551630 MYH3P11055 1940 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 UBTFL1P0CB47 393 aaPredicted RBP19.25■□□□□ 0.67
PTCH1-224ENST00000551630 MS4A1P11836 297 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 YBX3P16989 372 aaKnown RBP eCLIP19.25■□□□□ 0.67
PTCH1-224ENST00000551630 HOXA10P31260 410 aaPredicted RBP19.25■□□□□ 0.67
PTCH1-224ENST00000551630 FOXO4P98177 505 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 CCDC152Q4G0S7 254 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 TTLL11Q8NHH1 800 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 CNKSR1Q969H4 720 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 SEC31BQ9NQW1 1179 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 COG6Q9Y2V7 657 aa19.25■□□□□ 0.67
PTCH1-224ENST00000551630 FAM161AQ3B820 660 aa19.24■□□□□ 0.67
PTCH1-224ENST00000551630 PRPF40BQ6NWY9 871 aaKnown RBP19.24■□□□□ 0.67
PTCH1-224ENST00000551630 DDX46Q7L014 1031 aaKnown RBP19.24■□□□□ 0.67
PTCH1-224ENST00000551630 SLC51AQ86UW1 340 aa19.24■□□□□ 0.67
PTCH1-224ENST00000551630 CRAMP1Q96RY5 1269 aa19.24■□□□□ 0.67
PTCH1-224ENST00000551630 BICC1Q9H694 974 aaKnown RBP19.24■□□□□ 0.67
PTCH1-224ENST00000551630 GREM2Q9H772 168 aa19.24■□□□□ 0.67
PTCH1-224ENST00000551630 ZNF219Q9P2Y4 722 aaPredicted RBP19.24■□□□□ 0.67
PTCH1-224ENST00000551630 CHMP3Q9Y3E7 222 aa19.24■□□□□ 0.67
PTCH1-224ENST00000551630 SLX4Q8IY92 1834 aa19.23■□□□□ 0.67
PTCH1-224ENST00000551630 PDE3AQ14432 1141 aa19.23■□□□□ 0.67
PTCH1-224ENST00000551630 MVPQ14764 893 aaKnown RBP19.23■□□□□ 0.67
PTCH1-224ENST00000551630 GPR162Q16538 588 aa19.23■□□□□ 0.67
PTCH1-224ENST00000551630 LMBR1LQ6UX01 489 aa19.23■□□□□ 0.67
PTCH1-224ENST00000551630 LRRFIP2Q9Y608 721 aaKnown RBP19.23■□□□□ 0.67
PTCH1-224ENST00000551630 TAF1P21675 1872 aa19.22■□□□□ 0.67
PTCH1-224ENST00000551630 CSF1RP07333 972 aa19.22■□□□□ 0.67
PTCH1-224ENST00000551630 ALDH1B1P30837 517 aa19.22■□□□□ 0.67
PTCH1-224ENST00000551630 GRAPQ13588 217 aa19.22■□□□□ 0.67
PTCH1-224ENST00000551630 ANKRD44Q8N8A2 993 aa19.22■□□□□ 0.67
PTCH1-224ENST00000551630 GRAPLQ8TC17 118 aaPredicted RBP19.22■□□□□ 0.67
PTCH1-224ENST00000551630 CELF1Q92879 486 aaKnown RBP19.22■□□□□ 0.67
PTCH1-224ENST00000551630 SUPT16HQ9Y5B9 1047 aaKnown RBP19.22■□□□□ 0.67
PTCH1-224ENST00000551630 PPEF1O14829 653 aaPredicted RBP19.21■□□□□ 0.67
PTCH1-224ENST00000551630 GNAI3P08754 354 aa19.21■□□□□ 0.67
PTCH1-224ENST00000551630 RTL9Q8NET4 1388 aa19.2■□□□□ 0.66
PTCH1-224ENST00000551630 ZBTB7BO15156 539 aaPredicted RBP19.2■□□□□ 0.66
PTCH1-224ENST00000551630 C21orf2O43822 256 aa19.2■□□□□ 0.66
PTCH1-224ENST00000551630 ITGA6P23229 1130 aa19.2■□□□□ 0.66
PTCH1-224ENST00000551630 OLFM4Q6UX06 510 aa19.2■□□□□ 0.66
PTCH1-224ENST00000551630 C1orf115Q9H7X2 142 aa19.2■□□□□ 0.66
PTCH1-224ENST00000551630 ARFGEF1Q9Y6D6 1849 aa19.19■□□□□ 0.66
PTCH1-224ENST00000551630 RABL6Q3YEC7 729 aaPredicted RBP19.19■□□□□ 0.66
PTCH1-224ENST00000551630 DDX19BQ9UMR2 479 aa19.19■□□□□ 0.66
PTCH1-224ENST00000551630 SPEF2Q9C093 1822 aa19.17■□□□□ 0.66
PTCH1-224ENST00000551630 ANKRD18BA2A2Z9 1011 aa19.17■□□□□ 0.66
PTCH1-224ENST00000551630 GNAI2P04899 355 aa19.17■□□□□ 0.66
PTCH1-224ENST00000551630 ANKRD18AQ8IVF6 992 aa19.17■□□□□ 0.66
PTCH1-224ENST00000551630 C7orf43Q8WVR3 580 aa19.17■□□□□ 0.66
PTCH1-224ENST00000551630 CDC5LQ99459 802 aaKnown RBP19.17■□□□□ 0.66
PTCH1-224ENST00000551630 BBOX1O75936 387 aa19.16■□□□□ 0.66
PTCH1-224ENST00000551630 RPS8P62241 208 aaKnown RBP19.16■□□□□ 0.66
PTCH1-224ENST00000551630 IFIT5Q13325 482 aaKnown RBP19.16■□□□□ 0.66
PTCH1-224ENST00000551630 ZNF594Q96JF6 807 aaPredicted RBP19.16■□□□□ 0.66
PTCH1-224ENST00000551630 HDAC5Q9UQL6 1122 aa19.16■□□□□ 0.66
PTCH1-224ENST00000551630 CCDC57Q2TAC2 916 aa19.15■□□□□ 0.66
PTCH1-224ENST00000551630 CRBNQ96SW2 442 aa19.15■□□□□ 0.66
PTCH1-224ENST00000551630 ATP6V0A2Q9Y487 856 aa19.15■□□□□ 0.66
PTCH1-224ENST00000551630 LRRC37AA6NMS7 1700 aa19.14■□□□□ 0.66
PTCH1-224ENST00000551630 IGHMBP2P38935 993 aaKnown RBP19.14■□□□□ 0.65
PTCH1-224ENST00000551630 CCDC93Q567U6 631 aa19.14■□□□□ 0.65
PTCH1-224ENST00000551630 TAF7LQ5H9L4 462 aa19.14■□□□□ 0.65
PTCH1-224ENST00000551630 ARHGAP27Q6ZUM4 889 aa19.14■□□□□ 0.65
PTCH1-224ENST00000551630 DCAF8L1A6NGE4 600 aa19.13■□□□□ 0.65
PTCH1-224ENST00000551630 GRIN3BO60391 1043 aa19.13■□□□□ 0.65
PTCH1-224ENST00000551630 RASSF7Q02833 373 aa19.13■□□□□ 0.65
PTCH1-224ENST00000551630 SP8Q8IXZ3 490 aa19.13■□□□□ 0.65
PTCH1-224ENST00000551630 KLHDC4Q8TBB5 520 aa19.13■□□□□ 0.65
PTCH1-224ENST00000551630 SNED1Q8TER0 1413 aa19.13■□□□□ 0.65
PTCH1-224ENST00000551630 RFX5P48382 616 aaPredicted RBP19.12■□□□□ 0.65
PTCH1-224ENST00000551630 SOGA3Q5TF21 947 aa19.12■□□□□ 0.65
PTCH1-224ENST00000551630 TMC4Q7Z404 712 aa19.12■□□□□ 0.65
PTCH1-224ENST00000551630 ZBTB40Q9NUA8 1239 aa19.12■□□□□ 0.65
PTCH1-224ENST00000551630 PNMA6EA0A0J9YXQ4 647 aa19.11■□□□□ 0.65
PTCH1-224ENST00000551630 NFKBIEO00221 500 aa19.11■□□□□ 0.65
PTCH1-224ENST00000551630 MPHOSPH8Q99549 860 aa19.11■□□□□ 0.65
PTCH1-224ENST00000551630 TMX4Q9H1E5 349 aaPredicted RBP19.11■□□□□ 0.65
PTCH1-224ENST00000551630 BSDC1Q9NW68 430 aaPredicted RBP19.11■□□□□ 0.65
PTCH1-224ENST00000551630 FER1L6Q2WGJ9 1857 aa19.1■□□□□ 0.65
PTCH1-224ENST00000551630 SRGAP3O43295 1099 aa19.1■□□□□ 0.65
PTCH1-224ENST00000551630 CENPBP07199 599 aaPredicted RBP19.1■□□□□ 0.65
PTCH1-224ENST00000551630 IRX6P78412 446 aaPredicted RBP19.1■□□□□ 0.65
PTCH1-224ENST00000551630 GPSM2P81274 684 aa19.1■□□□□ 0.65
PTCH1-224ENST00000551630 MTX1Q13505 466 aa19.1■□□□□ 0.65
PTCH1-224ENST00000551630 CC2D2BQ6DHV5 1058 aa19.1■□□□□ 0.65
PTCH1-224ENST00000551630 GOLGB1Q14789 3259 aaKnown RBP19.09■□□□□ 0.65
PTCH1-224ENST00000551630 CEP85Q6P2H3 762 aa19.09■□□□□ 0.65
PTCH1-224ENST00000551630 PUS3Q9BZE2 481 aaKnown RBP19.09■□□□□ 0.65
PTCH1-224ENST00000551630 TAOK3Q9H2K8 898 aa19.09■□□□□ 0.65
PTCH1-224ENST00000551630 CHMP4BQ9H444 224 aaKnown RBP19.09■□□□□ 0.65
PTCH1-224ENST00000551630 MINPP1Q9UNW1 487 aa19.09■□□□□ 0.65
PTCH1-224ENST00000551630 PA2G4Q9UQ80 394 aaKnown RBP19.09■□□□□ 0.65
PTCH1-224ENST00000551630 DUOX1Q9NRD9 1551 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms