RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CHMP4BQ9H444 224 aaKnown RBP17.3■□□□□ 0.36
PTCH1-213ENST00000546820 TNNQ9UQP3 1299 aa17.3■□□□□ 0.36
PTCH1-213ENST00000546820 ITPRIPQ8IWB1 547 aa17.29■□□□□ 0.36
PTCH1-213ENST00000546820 TTLL11Q8NHH1 800 aa17.29■□□□□ 0.36
PTCH1-213ENST00000546820 WWC3Q9ULE0 1092 aa17.29■□□□□ 0.36
PTCH1-213ENST00000546820 CSF1RP07333 972 aa17.28■□□□□ 0.36
PTCH1-213ENST00000546820 PRPF40BQ6NWY9 871 aaKnown RBP17.28■□□□□ 0.36
PTCH1-213ENST00000546820 PANK1Q8TE04 598 aa17.28■□□□□ 0.36
PTCH1-213ENST00000546820 RLBP1P12271 317 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 FOXO4P98177 505 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 GRAPQ13588 217 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 SOGA3Q5TF21 947 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 TMC4Q7Z404 712 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 GRAPLQ8TC17 118 aaPredicted RBP17.27■□□□□ 0.36
PTCH1-213ENST00000546820 SUCLG2Q96I99 432 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 CHMP3Q9Y3E7 222 aa17.27■□□□□ 0.36
PTCH1-213ENST00000546820 RPS8P62241 208 aaKnown RBP17.26■□□□□ 0.35
PTCH1-213ENST00000546820 CCDC57Q2TAC2 916 aa17.26■□□□□ 0.35
PTCH1-213ENST00000546820 CC2D2BQ6DHV5 1058 aa17.26■□□□□ 0.35
PTCH1-213ENST00000546820 LMBR1LQ6UX01 489 aa17.26■□□□□ 0.35
PTCH1-213ENST00000546820 CCDC85AQ96PX6 553 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-213ENST00000546820 CDC5LQ99459 802 aaKnown RBP17.26■□□□□ 0.35
PTCH1-213ENST00000546820 DDX60Q8IY21 1712 aaKnown RBP17.26■□□□□ 0.35
PTCH1-213ENST00000546820 SRCAPQ6ZRS2 3230 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 KIAA1551Q9HCM1 1747 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 ANKRD18BA2A2Z9 1011 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 GNAI2P04899 355 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 RRP1P56182 461 aaKnown RBP17.25■□□□□ 0.35
PTCH1-213ENST00000546820 IFIT5Q13325 482 aaKnown RBP17.25■□□□□ 0.35
PTCH1-213ENST00000546820 GRIPAP1Q4V328 841 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 ANKRD18AQ8IVF6 992 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 MEIS3Q99687 375 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 GREM2Q9H772 168 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 DDX19BQ9UMR2 479 aa17.25■□□□□ 0.35
PTCH1-213ENST00000546820 TNRC6CQ9HCJ0 1690 aaKnown RBP17.25■□□□□ 0.35
PTCH1-213ENST00000546820 PPEF1O14829 653 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-213ENST00000546820 ZBTB7BO15156 539 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-213ENST00000546820 C21orf2O43822 256 aa17.24■□□□□ 0.35
PTCH1-213ENST00000546820 YBX3P16989 372 aaKnown RBP eCLIP17.24■□□□□ 0.35
PTCH1-213ENST00000546820 ITGA6P23229 1130 aa17.24■□□□□ 0.35
PTCH1-213ENST00000546820 MVPQ14764 893 aaKnown RBP17.24■□□□□ 0.35
PTCH1-213ENST00000546820 EPHA10Q5JZY3 1008 aa17.24■□□□□ 0.35
PTCH1-213ENST00000546820 BICC1Q9H694 974 aaKnown RBP17.24■□□□□ 0.35
PTCH1-213ENST00000546820 ZNF219Q9P2Y4 722 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-213ENST00000546820 COG6Q9Y2V7 657 aa17.24■□□□□ 0.35
PTCH1-213ENST00000546820 DLEC1Q9Y238 1755 aa17.24■□□□□ 0.35
PTCH1-213ENST00000546820 RTL9Q8NET4 1388 aa17.24■□□□□ 0.35
PTCH1-213ENST00000546820 LAMB2P55268 1798 aa17.23■□□□□ 0.35
PTCH1-213ENST00000546820 IGHMBP2P38935 993 aaKnown RBP17.23■□□□□ 0.35
PTCH1-213ENST00000546820 TAF7LQ5H9L4 462 aa17.23■□□□□ 0.35
PTCH1-213ENST00000546820 ARHGAP27Q6ZUM4 889 aa17.23■□□□□ 0.35
PTCH1-213ENST00000546820 SP8Q8IXZ3 490 aa17.23■□□□□ 0.35
PTCH1-213ENST00000546820 KAZALD1Q96I82 304 aa17.23■□□□□ 0.35
PTCH1-213ENST00000546820 SEC31BQ9NQW1 1179 aa17.23■□□□□ 0.35
PTCH1-213ENST00000546820 SUPT16HQ9Y5B9 1047 aaKnown RBP17.23■□□□□ 0.35
PTCH1-213ENST00000546820 MYH3P11055 1940 aa17.22■□□□□ 0.35
PTCH1-213ENST00000546820 RABL6Q3YEC7 729 aaPredicted RBP17.22■□□□□ 0.35
PTCH1-213ENST00000546820 RTKN2Q8IZC4 609 aa17.22■□□□□ 0.35
PTCH1-213ENST00000546820 C7orf43Q8WVR3 580 aa17.22■□□□□ 0.35
PTCH1-213ENST00000546820 CELF1Q92879 486 aaKnown RBP17.22■□□□□ 0.35
PTCH1-213ENST00000546820 MPHOSPH8Q99549 860 aa17.22■□□□□ 0.35
PTCH1-213ENST00000546820 ATP6V0A2Q9Y487 856 aa17.22■□□□□ 0.35
PTCH1-213ENST00000546820 LRRFIP2Q9Y608 721 aaKnown RBP17.22■□□□□ 0.35
PTCH1-213ENST00000546820 COL11A2P13942 1736 aaPredicted RBP17.21■□□□□ 0.35
PTCH1-213ENST00000546820 BRCA1P38398 1863 aaKnown RBP17.21■□□□□ 0.35
PTCH1-213ENST00000546820 FAM161AQ3B820 660 aa17.21■□□□□ 0.35
PTCH1-213ENST00000546820 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
PTCH1-213ENST00000546820 C20orf194Q5TEA3 1177 aa17.21■□□□□ 0.35
PTCH1-213ENST00000546820 SLX4Q8IY92 1834 aa17.2■□□□□ 0.34
PTCH1-213ENST00000546820 ANKRD44Q8N8A2 993 aa17.2■□□□□ 0.34
PTCH1-213ENST00000546820 BSDC1Q9NW68 430 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-213ENST00000546820 CENPBP07199 599 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-213ENST00000546820 LDHAL6AQ6ZMR3 332 aa17.18■□□□□ 0.34
PTCH1-213ENST00000546820 MPNDQ8N594 471 aa17.18■□□□□ 0.34
PTCH1-213ENST00000546820 ARFGEF1Q9Y6D6 1849 aa17.18■□□□□ 0.34
PTCH1-213ENST00000546820 SUPT20HQ8NEM7 779 aa17.17■□□□□ 0.34
PTCH1-213ENST00000546820 CACNA1SQ13698 1873 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 SRGAP3O43295 1099 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 ATP8B2P98198 1209 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 MTX1Q13505 466 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 DPP8Q6V1X1 898 aaPredicted RBP17.16■□□□□ 0.34
PTCH1-213ENST00000546820 ANKRD2Q9GZV1 360 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 TAOK3Q9H2K8 898 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 CNNM1Q9NRU3 951 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 ZBTB40Q9NUA8 1239 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 ANKIB1Q9P2G1 1089 aa17.16■□□□□ 0.34
PTCH1-213ENST00000546820 NSFL1CQ9UNZ2 370 aaKnown RBP17.16■□□□□ 0.34
PTCH1-213ENST00000546820 FKBP4Q02790 459 aaKnown RBP eCLIP17.15■□□□□ 0.34
PTCH1-213ENST00000546820 OLFM4Q6UX06 510 aa17.15■□□□□ 0.34
PTCH1-213ENST00000546820 ZNF594Q96JF6 807 aaPredicted RBP17.15■□□□□ 0.34
PTCH1-213ENST00000546820 PSMD1Q99460 953 aa17.15■□□□□ 0.34
PTCH1-213ENST00000546820 MINPP1Q9UNW1 487 aa17.15■□□□□ 0.34
PTCH1-213ENST00000546820 TAF1P21675 1872 aa17.15■□□□□ 0.34
PTCH1-213ENST00000546820 LTBP3Q9NS15 1303 aa17.15■□□□□ 0.34
PTCH1-213ENST00000546820 RPAP2Q8IXW5 612 aaPredicted RBP17.14■□□□□ 0.33
PTCH1-213ENST00000546820 VPS33BQ9H267 617 aa17.14■□□□□ 0.33
PTCH1-213ENST00000546820 C1orf115Q9H7X2 142 aa17.14■□□□□ 0.33
PTCH1-213ENST00000546820 FBXO3Q9UK99 471 aa17.14■□□□□ 0.33
PTCH1-213ENST00000546820 LMNB1P20700 586 aa17.13■□□□□ 0.33
PTCH1-213ENST00000546820 GPSM2P81274 684 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms