RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 PRPF40BQ6NWY9 871 aaKnown RBP25.85■■□□□ 1.73
HMGA2-211ENST00000545998 CRAMP1Q96RY5 1269 aa25.85■■□□□ 1.73
HMGA2-211ENST00000545998 CTSWP56202 376 aa25.84■■□□□ 1.73
HMGA2-211ENST00000545998 DCAF8L1A6NGE4 600 aa25.82■■□□□ 1.72
HMGA2-211ENST00000545998 DZIP1LQ8IYY4 767 aaKnown RBP25.82■■□□□ 1.72
HMGA2-211ENST00000545998 RLBP1P12271 317 aa25.82■■□□□ 1.72
HMGA2-211ENST00000545998 CCDC152Q4G0S7 254 aa25.82■■□□□ 1.72
HMGA2-211ENST00000545998 DDX46Q7L014 1031 aaKnown RBP25.82■■□□□ 1.72
HMGA2-211ENST00000545998 FTSJ3Q8IY81 847 aaKnown RBP25.82■■□□□ 1.72
HMGA2-211ENST00000545998 TMEM57Q8N5G2 664 aa25.82■■□□□ 1.72
HMGA2-211ENST00000545998 TTLL11Q8NHH1 800 aa25.82■■□□□ 1.72
HMGA2-211ENST00000545998 PLIN1O60240 522 aa25.81■■□□□ 1.72
HMGA2-211ENST00000545998 FOXO4P98177 505 aa25.81■■□□□ 1.72
HMGA2-211ENST00000545998 COL4A1P02462 1669 aa25.8■■□□□ 1.72
HMGA2-211ENST00000545998 CSF1RP07333 972 aa25.8■■□□□ 1.72
HMGA2-211ENST00000545998 C7orf43Q8WVR3 580 aa25.8■■□□□ 1.72
HMGA2-211ENST00000545998 KAZALD1Q96I82 304 aa25.8■■□□□ 1.72
HMGA2-211ENST00000545998 SUCLG2Q96I99 432 aa25.8■■□□□ 1.72
HMGA2-211ENST00000545998 GRIN3BO60391 1043 aa25.79■■□□□ 1.72
HMGA2-211ENST00000545998 EPHA10Q5JZY3 1008 aa25.79■■□□□ 1.72
HMGA2-211ENST00000545998 CCDC85AQ96PX6 553 aaPredicted RBP25.79■■□□□ 1.72
HMGA2-211ENST00000545998 RTL9Q8NET4 1388 aa25.78■■□□□ 1.72
HMGA2-211ENST00000545998 GRAPQ13588 217 aa25.78■■□□□ 1.72
HMGA2-211ENST00000545998 GRAPLQ8TC17 118 aaPredicted RBP25.78■■□□□ 1.72
HMGA2-211ENST00000545998 C21orf2O43822 256 aa25.78■■□□□ 1.72
HMGA2-211ENST00000545998 GREM2Q9H772 168 aa25.78■■□□□ 1.72
HMGA2-211ENST00000545998 SEC31BQ9NQW1 1179 aa25.78■■□□□ 1.72
HMGA2-211ENST00000545998 MS4A1P11836 297 aa25.77■■□□□ 1.72
HMGA2-211ENST00000545998 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.77■■□□□ 1.72
HMGA2-211ENST00000545998 PANK1Q8TE04 598 aa25.77■■□□□ 1.72
HMGA2-211ENST00000545998 MEIS3Q99687 375 aa25.77■■□□□ 1.72
HMGA2-211ENST00000545998 ZNF219Q9P2Y4 722 aaPredicted RBP25.77■■□□□ 1.72
HMGA2-211ENST00000545998 PPEF1O14829 653 aaPredicted RBP25.76■■□□□ 1.71
HMGA2-211ENST00000545998 BBOX1O75936 387 aa25.76■■□□□ 1.71
HMGA2-211ENST00000545998 CELF1Q92879 486 aaKnown RBP25.76■■□□□ 1.71
HMGA2-211ENST00000545998 FER1L6Q2WGJ9 1857 aa25.76■■□□□ 1.71
HMGA2-211ENST00000545998 UBTFL1P0CB47 393 aaPredicted RBP25.75■■□□□ 1.71
HMGA2-211ENST00000545998 FAM161AQ3B820 660 aa25.74■■□□□ 1.71
HMGA2-211ENST00000545998 LMBR1LQ6UX01 489 aa25.74■■□□□ 1.71
HMGA2-211ENST00000545998 BICC1Q9H694 974 aaKnown RBP25.74■■□□□ 1.71
HMGA2-211ENST00000545998 RABL6Q3YEC7 729 aaPredicted RBP25.73■■□□□ 1.71
HMGA2-211ENST00000545998 OLFM4Q6UX06 510 aa25.73■■□□□ 1.71
HMGA2-211ENST00000545998 ITPRIPQ8IWB1 547 aa25.73■■□□□ 1.71
HMGA2-211ENST00000545998 GNAI3P08754 354 aa25.73■■□□□ 1.71
HMGA2-211ENST00000545998 RPS8P62241 208 aaKnown RBP25.73■■□□□ 1.71
HMGA2-211ENST00000545998 SOGA3Q5TF21 947 aa25.73■■□□□ 1.71
HMGA2-211ENST00000545998 SLC51AQ86UW1 340 aa25.73■■□□□ 1.71
HMGA2-211ENST00000545998 ANKRD44Q8N8A2 993 aa25.73■■□□□ 1.71
HMGA2-211ENST00000545998 LRRC37AA6NMS7 1700 aa25.72■■□□□ 1.71
HMGA2-211ENST00000545998 SPEF2Q9C093 1822 aa25.72■■□□□ 1.71
HMGA2-211ENST00000545998 ITGA6P23229 1130 aa25.72■■□□□ 1.71
HMGA2-211ENST00000545998 PDE3AQ14432 1141 aa25.72■■□□□ 1.71
HMGA2-211ENST00000545998 ARHGAP27Q6ZUM4 889 aa25.72■■□□□ 1.71
HMGA2-211ENST00000545998 ATP6V0A2Q9Y487 856 aa25.72■■□□□ 1.71
HMGA2-211ENST00000545998 SNED1Q8TER0 1413 aa25.71■■□□□ 1.71
HMGA2-211ENST00000545998 TMC4Q7Z404 712 aa25.71■■□□□ 1.71
HMGA2-211ENST00000545998 CDC5LQ99459 802 aaKnown RBP25.71■■□□□ 1.71
HMGA2-211ENST00000545998 HDAC5Q9UQL6 1122 aa25.71■■□□□ 1.71
HMGA2-211ENST00000545998 CHD4Q14839 1912 aa25.71■■□□□ 1.71
HMGA2-211ENST00000545998 CCDC93Q567U6 631 aa25.7■■□□□ 1.71
HMGA2-211ENST00000545998 C20orf194Q5TEA3 1177 aa25.7■■□□□ 1.71
HMGA2-211ENST00000545998 SP8Q8IXZ3 490 aa25.7■■□□□ 1.71
HMGA2-211ENST00000545998 LRRFIP2Q9Y608 721 aaKnown RBP25.7■■□□□ 1.71
HMGA2-211ENST00000545998 SBF1O95248 1867 aa25.7■■□□□ 1.7
HMGA2-211ENST00000545998 RRP1P56182 461 aaKnown RBP25.69■■□□□ 1.7
HMGA2-211ENST00000545998 CC2D2BQ6DHV5 1058 aa25.69■■□□□ 1.7
HMGA2-211ENST00000545998 ANKRD18AQ8IVF6 992 aa25.69■■□□□ 1.7
HMGA2-211ENST00000545998 CHMP3Q9Y3E7 222 aa25.69■■□□□ 1.7
HMGA2-211ENST00000545998 NFKBIEO00221 500 aa25.69■■□□□ 1.7
HMGA2-211ENST00000545998 ZBTB7BO15156 539 aaPredicted RBP25.69■■□□□ 1.7
HMGA2-211ENST00000545998 IFIT5Q13325 482 aaKnown RBP25.69■■□□□ 1.7
HMGA2-211ENST00000545998 MVPQ14764 893 aaKnown RBP25.69■■□□□ 1.7
HMGA2-211ENST00000545998 ANKRD18BA2A2Z9 1011 aa25.68■■□□□ 1.7
HMGA2-211ENST00000545998 RTKN2Q8IZC4 609 aa25.68■■□□□ 1.7
HMGA2-211ENST00000545998 COG6Q9Y2V7 657 aa25.68■■□□□ 1.7
HMGA2-211ENST00000545998 CCDC57Q2TAC2 916 aa25.67■■□□□ 1.7
HMGA2-211ENST00000545998 CCDC88AQ3V6T2 1871 aa25.67■■□□□ 1.7
HMGA2-211ENST00000545998 GNAI2P04899 355 aa25.66■■□□□ 1.7
HMGA2-211ENST00000545998 RASSF7Q02833 373 aa25.66■■□□□ 1.7
HMGA2-211ENST00000545998 GRIPAP1Q4V328 841 aa25.66■■□□□ 1.7
HMGA2-211ENST00000545998 TMX4Q9H1E5 349 aaPredicted RBP25.66■■□□□ 1.7
HMGA2-211ENST00000545998 BSDC1Q9NW68 430 aaPredicted RBP25.65■■□□□ 1.7
HMGA2-211ENST00000545998 LTBP3Q9NS15 1303 aa25.65■■□□□ 1.7
HMGA2-211ENST00000545998 IGHMBP2P38935 993 aaKnown RBP25.65■■□□□ 1.7
HMGA2-211ENST00000545998 LTBP1Q14766 1721 aa25.64■■□□□ 1.69
HMGA2-211ENST00000545998 TAOK3Q9H2K8 898 aa25.64■■□□□ 1.69
HMGA2-211ENST00000545998 DDX19BQ9UMR2 479 aa25.64■■□□□ 1.69
HMGA2-211ENST00000545998 FKBP4Q02790 459 aaKnown RBP eCLIP25.63■■□□□ 1.693e-6■■□□□ 13
HMGA2-211ENST00000545998 ZNF594Q96JF6 807 aaPredicted RBP25.63■■□□□ 1.69
HMGA2-211ENST00000545998 PSMD1Q99460 953 aa25.63■■□□□ 1.69
HMGA2-211ENST00000545998 PRELPP51888 382 aa25.62■■□□□ 1.69
HMGA2-211ENST00000545998 MPHOSPH8Q99549 860 aa25.62■■□□□ 1.69
HMGA2-211ENST00000545998 MPNDQ8N594 471 aa25.61■■□□□ 1.69
HMGA2-211ENST00000545998 RFX5P48382 616 aaPredicted RBP25.61■■□□□ 1.69
HMGA2-211ENST00000545998 GPSM2P81274 684 aa25.61■■□□□ 1.69
HMGA2-211ENST00000545998 MTX1Q13505 466 aa25.61■■□□□ 1.69
HMGA2-211ENST00000545998 TAF7LQ5H9L4 462 aa25.61■■□□□ 1.69
HMGA2-211ENST00000545998 MINPP1Q9UNW1 487 aa25.61■■□□□ 1.69
HMGA2-211ENST00000545998 DUOX1Q9NRD9 1551 aa25.6■■□□□ 1.69
HMGA2-211ENST00000545998 DICER1Q9UPY3 1922 aaKnown RBP25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms