RNA–Protein interactions for RNA: ENST00000545153.5

PTPN6-223, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 3

Gene PTPN6, Length 959 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-223	ENST00000545153	CCDC152	Q4G0S7	254 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	SP8	Q8IXZ3	490 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	SRCIN1	Q9C0H9	1055 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	SEC31B	Q9NQW1	1179 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	ZNF277	Q9NRM2	450 aa	Predicted RBP	18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	NOB1	Q9ULX3	412 aa	Known RBP	18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	ARFGEF1	Q9Y6D6	1849 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	ZBED9	Q6R2W3	1325 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	LTBP3	Q9NS15	1303 aa		18.2	■□□□□ 0.5
PTPN6-223	ENST00000545153	CASP7	P55210	303 aa		18.19	■□□□□ 0.5
PTPN6-223	ENST00000545153	ALDH1L1	O75891	902 aa		18.18	■□□□□ 0.5
PTPN6-223	ENST00000545153	RPS8	P62241	208 aa	Known RBP	18.18	■□□□□ 0.5
PTPN6-223	ENST00000545153	GRIPAP1	Q4V328	841 aa		18.18	■□□□□ 0.5
PTPN6-223	ENST00000545153	TTLL11	Q8NHH1	800 aa		18.18	■□□□□ 0.5
PTPN6-223	ENST00000545153	GPBP1L1	Q9HC44	474 aa	Predicted RBP	18.18	■□□□□ 0.5
PTPN6-223	ENST00000545153	CHD4	Q14839	1912 aa		18.17	■□□□□ 0.5
PTPN6-223	ENST00000545153	CTSW	P56202	376 aa		18.17	■□□□□ 0.5
PTPN6-223	ENST00000545153	PSMD1	Q99460	953 aa		18.17	■□□□□ 0.5
PTPN6-223	ENST00000545153	C9orf78	Q9NZ63	289 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPN6-223	ENST00000545153	TMC4	Q7Z404	712 aa		18.16	■□□□□ 0.5
PTPN6-223	ENST00000545153	MPND	Q8N594	471 aa		18.16	■□□□□ 0.5
PTPN6-223	ENST00000545153	PLA2G12B	Q9BX93	195 aa		18.16	■□□□□ 0.5
PTPN6-223	ENST00000545153	GRM8	O00222	908 aa		18.15	■□□□□ 0.5
PTPN6-223	ENST00000545153	IARS	P41252	1262 aa	Known RBP	18.15	■□□□□ 0.5
PTPN6-223	ENST00000545153	BRPF1	P55201	1214 aa	Predicted RBP	18.15	■□□□□ 0.5
PTPN6-223	ENST00000545153	DPP8	Q6V1X1	898 aa	Predicted RBP	18.15	■□□□□ 0.5
PTPN6-223	ENST00000545153	GREM2	Q9H772	168 aa		18.15	■□□□□ 0.5
PTPN6-223	ENST00000545153	BCAR3	O75815	825 aa		18.14	■□□□□ 0.49
PTPN6-223	ENST00000545153	CSF1R	P07333	972 aa		18.14	■□□□□ 0.49
PTPN6-223	ENST00000545153	FOXO4	P98177	505 aa		18.13	■□□□□ 0.49
PTPN6-223	ENST00000545153	ANKRD18A	Q8IVF6	992 aa		18.13	■□□□□ 0.49
PTPN6-223	ENST00000545153	API5	Q9BZZ5	524 aa	Known RBP	18.13	■□□□□ 0.49
PTPN6-223	ENST00000545153	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.13	■□□□□ 0.49
PTPN6-223	ENST00000545153	SNED1	Q8TER0	1413 aa		18.13	■□□□□ 0.49
PTPN6-223	ENST00000545153	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	GPSM2	P81274	684 aa		18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	EPHA10	Q5JZY3	1008 aa		18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	DPY19L2	Q6NUT2	758 aa		18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	SUPT20H	Q8NEM7	779 aa		18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	CDC5L	Q99459	802 aa	Known RBP	18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	ZC3H4	Q9UPT8	1303 aa	Known RBP	18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	DDX60	Q8IY21	1712 aa	Known RBP	18.12	■□□□□ 0.49
PTPN6-223	ENST00000545153	GLTPD2	A6NH11	291 aa		18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	LARGE2	Q8N3Y3	721 aa		18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	ARHGAP45	Q92619	1136 aa		18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	FRAT1	Q92837	279 aa	Predicted RBP	18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	RRAGC	Q9HB90	399 aa		18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	NMRK2	Q9NPI5	230 aa		18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	KDM2B	Q8NHM5	1336 aa		18.11	■□□□□ 0.49
PTPN6-223	ENST00000545153	PPIP5K2	O43314	1243 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	ITGA6	P23229	1130 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	CCT4	P50991	539 aa	Known RBP	18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	FAM161A	Q3B820	660 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	LMBR1L	Q6UX01	489 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	JDP2	Q8WYK2	163 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	SUCLG2	Q96I99	432 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	USP44	Q9H0E7	712 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	CHMP3	Q9Y3E7	222 aa		18.1	■□□□□ 0.49
PTPN6-223	ENST00000545153	UTY	O14607	1347 aa		18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	C6orf229	H3BNL8	230 aa		18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	IPO8	O15397	1037 aa	Known RBP	18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	AOC3	Q16853	763 aa		18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	KAZALD1	Q96I82	304 aa		18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	VPS33B	Q9H267	617 aa		18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	CACNA1F	O60840	1977 aa		18.09	■□□□□ 0.49
PTPN6-223	ENST00000545153	RTL9	Q8NET4	1388 aa		18.08	■□□□□ 0.49
PTPN6-223	ENST00000545153	CACNA1S	Q13698	1873 aa		18.08	■□□□□ 0.49
PTPN6-223	ENST00000545153	FER1L6	Q2WGJ9	1857 aa		18.08	■□□□□ 0.49
PTPN6-223	ENST00000545153	KIF16B	Q96L93	1317 aa		18.08	■□□□□ 0.49
PTPN6-223	ENST00000545153	ANKRD18B	A2A2Z9	1011 aa		18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	DDN	O94850	711 aa	Predicted RBP	18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	IGHMBP2	P38935	993 aa	Known RBP	18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	BSDC1	Q9NW68	430 aa	Predicted RBP	18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	ANKIB1	Q9P2G1	1089 aa		18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	POLL	Q9UGP5	575 aa		18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	LAMB2	P55268	1798 aa		18.08	■□□□□ 0.48
PTPN6-223	ENST00000545153	COL4A1	P02462	1669 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	FZD9	O00144	591 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	KIF3C	O14782	793 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	RIMBP2	O15034	1052 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	IFIT5	Q13325	482 aa	Known RBP	18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	TBC1D16	Q8TBP0	767 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	MINPP1	Q9UNW1	487 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	TNN	Q9UQP3	1299 aa		18.07	■□□□□ 0.48
PTPN6-223	ENST00000545153	KIAA2012	Q0VF49	1180 aa		18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	WASHC4	Q2M389	1173 aa		18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	ATF7IP	Q6VMQ6	1270 aa		18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	NIM1K	Q8IY84	436 aa		18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	GPR101	Q96P66	508 aa	Predicted RBP	18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	MPHOSPH8	Q99549	860 aa		18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	PODXL2	Q9NZ53	605 aa		18.06	■□□□□ 0.48
PTPN6-223	ENST00000545153	SBF1	O95248	1867 aa		18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	ZNF541	Q9H0D2	1346 aa		18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	EIF6	P56537	245 aa	Known RBP	18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	CCDC57	Q2TAC2	916 aa		18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	CLUAP1	Q96AJ1	413 aa		18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	ZNF594	Q96JF6	807 aa	Predicted RBP	18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	BICC1	Q9H694	974 aa	Known RBP	18.05	■□□□□ 0.48
PTPN6-223	ENST00000545153	GGA1	Q9UJY5	639 aa		18.05	■□□□□ 0.48

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms