RNA–Protein interactions for RNA: ENST00000543928.5

SP140-213, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-213ENST00000543928 STYK1Q6J9G0 422 aa17.15■□□□□ 0.34
SP140-213ENST00000543928 MEIS3Q99687 375 aa17.15■□□□□ 0.34
SP140-213ENST00000543928 PIM2Q9P1W9 311 aa17.15■□□□□ 0.34
SP140-213ENST00000543928 UBTFL1P0CB47 393 aaPredicted RBP17.14■□□□□ 0.33
SP140-213ENST00000543928 C20orf194Q5TEA3 1177 aa17.14■□□□□ 0.33
SP140-213ENST00000543928 RBM17Q96I25 401 aaKnown RBP17.14■□□□□ 0.33
SP140-213ENST00000543928 SUCLG2Q96I99 432 aa17.14■□□□□ 0.33
SP140-213ENST00000543928 CCDC85AQ96PX6 553 aaPredicted RBP17.14■□□□□ 0.33
SP140-213ENST00000543928 HOXA10P31260 410 aaPredicted RBP17.13■□□□□ 0.33
SP140-213ENST00000543928 FOXO4P98177 505 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 CCDC152Q4G0S7 254 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 EPHA10Q5JZY3 1008 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 TTLL6Q8N841 843 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 TTLL11Q8NHH1 800 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 CNKSR1Q969H4 720 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 KAZALD1Q96I82 304 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 COG6Q9Y2V7 657 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 BRCA1P38398 1863 aaKnown RBP17.13■□□□□ 0.33
SP140-213ENST00000543928 MYH3P11055 1940 aa17.13■□□□□ 0.33
SP140-213ENST00000543928 GNAI3P08754 354 aa17.12■□□□□ 0.33
SP140-213ENST00000543928 MVPQ14764 893 aaKnown RBP17.12■□□□□ 0.33
SP140-213ENST00000543928 DALRD3Q5D0E6 543 aaKnown RBP17.12■□□□□ 0.33
SP140-213ENST00000543928 DDX46Q7L014 1031 aaKnown RBP17.12■□□□□ 0.33
SP140-213ENST00000543928 PELP1Q8IZL8 1130 aaKnown RBP17.12■□□□□ 0.33
SP140-213ENST00000543928 SUPT16HQ9Y5B9 1047 aaKnown RBP17.12■□□□□ 0.33
SP140-213ENST00000543928 CSF1RP07333 972 aa17.11■□□□□ 0.33
SP140-213ENST00000543928 ALDH1B1P30837 517 aa17.11■□□□□ 0.33
SP140-213ENST00000543928 HOXD11P31277 338 aaPredicted RBP17.11■□□□□ 0.33
SP140-213ENST00000543928 CRAMP1Q96RY5 1269 aa17.11■□□□□ 0.33
SP140-213ENST00000543928 BICC1Q9H694 974 aaKnown RBP17.11■□□□□ 0.33
SP140-213ENST00000543928 GREM2Q9H772 168 aa17.11■□□□□ 0.33
SP140-213ENST00000543928 BCS1LQ9Y276 419 aa17.11■□□□□ 0.33
SP140-213ENST00000543928 ZBTB7BO15156 539 aaPredicted RBP17.1■□□□□ 0.33
SP140-213ENST00000543928 FAM161AQ3B820 660 aa17.1■□□□□ 0.33
SP140-213ENST00000543928 PRPF40BQ6NWY9 871 aaKnown RBP17.1■□□□□ 0.33
SP140-213ENST00000543928 LMBR1LQ6UX01 489 aa17.1■□□□□ 0.33
SP140-213ENST00000543928 SEC31BQ9NQW1 1179 aa17.1■□□□□ 0.33
SP140-213ENST00000543928 HDAC5Q9UQL6 1122 aa17.1■□□□□ 0.33
SP140-213ENST00000543928 CHMP3Q9Y3E7 222 aa17.1■□□□□ 0.33
SP140-213ENST00000543928 LRRFIP2Q9Y608 721 aaKnown RBP17.1■□□□□ 0.33
SP140-213ENST00000543928 CACNA1SQ13698 1873 aa17.1■□□□□ 0.33
SP140-213ENST00000543928 GRAPQ13588 217 aa17.09■□□□□ 0.33
SP140-213ENST00000543928 RABL6Q3YEC7 729 aaPredicted RBP17.09■□□□□ 0.33
SP140-213ENST00000543928 ANKRD44Q8N8A2 993 aa17.09■□□□□ 0.33
SP140-213ENST00000543928 GRAPLQ8TC17 118 aaPredicted RBP17.09■□□□□ 0.33
SP140-213ENST00000543928 DDX19BQ9UMR2 479 aa17.09■□□□□ 0.33
SP140-213ENST00000543928 RTL9Q8NET4 1388 aa17.09■□□□□ 0.33
SP140-213ENST00000543928 SLX4Q8IY92 1834 aa17.09■□□□□ 0.33
SP140-213ENST00000543928 TAF1P21675 1872 aa17.08■□□□□ 0.33
SP140-213ENST00000543928 GNAI2P04899 355 aa17.08■□□□□ 0.32
SP140-213ENST00000543928 YBX3P16989 372 aaKnown RBP eCLIP17.08■□□□□ 0.32
SP140-213ENST00000543928 GPR162Q16538 588 aa17.08■□□□□ 0.32
SP140-213ENST00000543928 CELF1Q92879 486 aaKnown RBP17.08■□□□□ 0.32
SP140-213ENST00000543928 ZNF219Q9P2Y4 722 aaPredicted RBP17.08■□□□□ 0.32
SP140-213ENST00000543928 PPEF1O14829 653 aaPredicted RBP17.07■□□□□ 0.32
SP140-213ENST00000543928 ITGA6P23229 1130 aa17.07■□□□□ 0.32
SP140-213ENST00000543928 COL4A1P02462 1669 aa17.07■□□□□ 0.32
SP140-213ENST00000543928 ANKRD18BA2A2Z9 1011 aa17.06■□□□□ 0.32
SP140-213ENST00000543928 C21orf2O43822 256 aa17.06■□□□□ 0.32
SP140-213ENST00000543928 BBOX1O75936 387 aa17.06■□□□□ 0.32
SP140-213ENST00000543928 RPS8P62241 208 aaKnown RBP17.06■□□□□ 0.32
SP140-213ENST00000543928 IFIT5Q13325 482 aaKnown RBP17.06■□□□□ 0.32
SP140-213ENST00000543928 CDC5LQ99459 802 aaKnown RBP17.06■□□□□ 0.32
SP140-213ENST00000543928 C1orf115Q9H7X2 142 aa17.06■□□□□ 0.32
SP140-213ENST00000543928 ARFGEF1Q9Y6D6 1849 aa17.05■□□□□ 0.32
SP140-213ENST00000543928 CENPBP07199 599 aaPredicted RBP17.05■□□□□ 0.32
SP140-213ENST00000543928 CCDC57Q2TAC2 916 aa17.05■□□□□ 0.32
SP140-213ENST00000543928 ANKRD18AQ8IVF6 992 aa17.05■□□□□ 0.32
SP140-213ENST00000543928 C7orf43Q8WVR3 580 aa17.05■□□□□ 0.32
SP140-213ENST00000543928 CHMP4BQ9H444 224 aaKnown RBP17.05■□□□□ 0.32
SP140-213ENST00000543928 GOLGB1Q14789 3259 aaKnown RBP17.04■□□□□ 0.32
SP140-213ENST00000543928 OLFM4Q6UX06 510 aa17.04■□□□□ 0.32
SP140-213ENST00000543928 SLC51AQ86UW1 340 aa17.04■□□□□ 0.32
SP140-213ENST00000543928 CRBNQ96SW2 442 aa17.04■□□□□ 0.32
SP140-213ENST00000543928 ZBTB40Q9NUA8 1239 aa17.04■□□□□ 0.32
SP140-213ENST00000543928 ATP6V0A2Q9Y487 856 aa17.04■□□□□ 0.32
SP140-213ENST00000543928 DCAF8L1A6NGE4 600 aa17.03■□□□□ 0.32
SP140-213ENST00000543928 IGHMBP2P38935 993 aaKnown RBP17.03■□□□□ 0.32
SP140-213ENST00000543928 TAF7LQ5H9L4 462 aa17.03■□□□□ 0.32
SP140-213ENST00000543928 TMC4Q7Z404 712 aa17.03■□□□□ 0.32
SP140-213ENST00000543928 SP8Q8IXZ3 490 aa17.03■□□□□ 0.32
SP140-213ENST00000543928 ZNF594Q96JF6 807 aaPredicted RBP17.03■□□□□ 0.32
SP140-213ENST00000543928 SOGA3Q5TF21 947 aa17.02■□□□□ 0.32
SP140-213ENST00000543928 TMX4Q9H1E5 349 aaPredicted RBP17.02■□□□□ 0.32
SP140-213ENST00000543928 SPEF2Q9C093 1822 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 SRGAP3O43295 1099 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 GRIN3BO60391 1043 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 MTX1Q13505 466 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 CCDC93Q567U6 631 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 CC2D2BQ6DHV5 1058 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 ARHGAP27Q6ZUM4 889 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 MPHOSPH8Q99549 860 aa17.01■□□□□ 0.31
SP140-213ENST00000543928 BSDC1Q9NW68 430 aaPredicted RBP17.01■□□□□ 0.31
SP140-213ENST00000543928 RFX5P48382 616 aaPredicted RBP17■□□□□ 0.31
SP140-213ENST00000543928 KLHDC4Q8TBB5 520 aa17■□□□□ 0.31
SP140-213ENST00000543928 PNMA6EA0A0J9YXQ4 647 aa16.99■□□□□ 0.31
SP140-213ENST00000543928 ATP8B2P98198 1209 aa16.99■□□□□ 0.31
SP140-213ENST00000543928 CEP85Q6P2H3 762 aa16.99■□□□□ 0.31
SP140-213ENST00000543928 LDHAL6AQ6ZMR3 332 aa16.99■□□□□ 0.31
SP140-213ENST00000543928 RTKN2Q8IZC4 609 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms