RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KAZALD1Q96I82 304 aa16.26■□□□□ 0.19
VPS33A-208ENST00000543633 FSD1Q9BTV5 496 aa16.26■□□□□ 0.19
VPS33A-208ENST00000543633 ALS2Q96Q42 1657 aa16.26■□□□□ 0.19
VPS33A-208ENST00000543633 A0A0D9SFI3 127 aa16.26■□□□□ 0.19
VPS33A-208ENST00000543633 TOB2Q14106 344 aaPredicted RBP16.26■□□□□ 0.19
VPS33A-208ENST00000543633 TDRD7Q8NHU6 1098 aaKnown RBP16.26■□□□□ 0.19
VPS33A-208ENST00000543633 TNMDQ9H2S6 317 aa16.26■□□□□ 0.19
VPS33A-208ENST00000543633 BICC1Q9H694 974 aaKnown RBP16.26■□□□□ 0.19
VPS33A-208ENST00000543633 PROSER3Q2NL68 480 aa16.25■□□□□ 0.19
VPS33A-208ENST00000543633 CWF19L2Q2TBE0 894 aaKnown RBP16.25■□□□□ 0.19
VPS33A-208ENST00000543633 MPRIPQ6WCQ1 1025 aa16.25■□□□□ 0.19
VPS33A-208ENST00000543633 SPATA32Q96LK8 384 aa16.25■□□□□ 0.19
VPS33A-208ENST00000543633 GOLGA6L4A6NEF3 574 aa16.24■□□□□ 0.19
VPS33A-208ENST00000543633 LIG1P18858 919 aa16.24■□□□□ 0.19
VPS33A-208ENST00000543633 LARP1Q6PKG0 1096 aaKnown RBP16.24■□□□□ 0.19
VPS33A-208ENST00000543633 LEO1Q8WVC0 666 aaPredicted RBP16.24■□□□□ 0.19
VPS33A-208ENST00000543633 CDC25BP30305 580 aa16.24■□□□□ 0.19
VPS33A-208ENST00000543633 SYCP1Q15431 976 aa16.24■□□□□ 0.19
VPS33A-208ENST00000543633 ZNF710Q8N1W2 664 aa16.24■□□□□ 0.19
VPS33A-208ENST00000543633 DDX17Q92841 729 aaKnown RBP16.24■□□□□ 0.19
VPS33A-208ENST00000543633 ZSCAN16Q9H4T2 348 aaPredicted RBP16.24■□□□□ 0.19
VPS33A-208ENST00000543633 PYCARDQ9ULZ3 195 aa16.24■□□□□ 0.19
VPS33A-208ENST00000543633 BRINP3Q76B58 766 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 ARHGEF25Q86VW2 580 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 GTF3C6Q969F1 213 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 TAF5LO75529 589 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 ATP5JP18859 108 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 PLCB2Q00722 1185 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 NEXNQ0ZGT2 675 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 PLA2G4DQ86XP0 818 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 COPRSQ9NQ92 184 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 DACT1Q9NYF0 836 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 SLAIN2Q9P270 581 aa16.23■□□□□ 0.19
VPS33A-208ENST00000543633 U3KPZ7 1027 aaPredicted RBP16.23■□□□□ 0.19
VPS33A-208ENST00000543633 AFDNP55196 1824 aaKnown RBP16.22■□□□□ 0.19
VPS33A-208ENST00000543633 CTIFO43310 598 aaKnown RBP16.22■□□□□ 0.19
VPS33A-208ENST00000543633 LLPHQ9BRT6 129 aaKnown RBP16.22■□□□□ 0.19
VPS33A-208ENST00000543633 CBX8Q9HC52 389 aa16.22■□□□□ 0.19
VPS33A-208ENST00000543633 RESTQ13127 1097 aa16.21■□□□□ 0.19
VPS33A-208ENST00000543633 C17orf53Q8N3J3 647 aaPredicted RBP16.21■□□□□ 0.19
VPS33A-208ENST00000543633 LRRC59Q96AG4 307 aaKnown RBP16.21■□□□□ 0.19
VPS33A-208ENST00000543633 CCDC8Q9H0W5 538 aaPredicted RBP16.21■□□□□ 0.19
VPS33A-208ENST00000543633 LTBP4Q8N2S1 1624 aa16.21■□□□□ 0.19
VPS33A-208ENST00000543633 ZNF75DP51815 510 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 PDIA6Q15084 440 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 ANO6Q4KMQ2 910 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 ATL3Q6DD88 541 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 FERMT3Q86UX7 667 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 MPNDQ8N594 471 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 BOLA2Q9H3K6 86 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 TLR7Q9NYK1 1049 aaKnown RBP16.21■□□□□ 0.18
VPS33A-208ENST00000543633 CFAP45Q9UL16 551 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 LAMA4Q16363 1823 aa16.21■□□□□ 0.18
VPS33A-208ENST00000543633 SPEF2Q9C093 1822 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 NEURL1BA8MQ27 555 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 CTAGE5O15320 804 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 IGKV5-2P06315 115 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 ANKRD7Q92527 254 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 BCL2L12Q9HB09 334 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 LAMB4A4D0S4 1761 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 ARFGEF2Q9Y6D5 1785 aa16.2■□□□□ 0.18
VPS33A-208ENST00000543633 GCP02774 474 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 HMGB1P09429 215 aaKnown RBP16.19■□□□□ 0.18
VPS33A-208ENST00000543633 GCKRQ14397 625 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 UTP14CQ5TAP6 766 aaKnown RBP16.19■□□□□ 0.18
VPS33A-208ENST00000543633 SARM1Q6SZW1 724 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 ZNF589Q86UQ0 364 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-208ENST00000543633 NEK1Q96PY6 1258 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 PTGS1P23219 599 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 NAA16Q6N069 864 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-208ENST00000543633 RIC3Q7Z5B4 369 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 LUZP1Q86V48 1076 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 SPC24Q8NBT2 197 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 ANKRD24Q8TF21 1146 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 CHMP4CQ96CF2 233 aa16.19■□□□□ 0.18
VPS33A-208ENST00000543633 METTL22Q9BUU2 404 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-208ENST00000543633 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-208ENST00000543633 SH3TC1Q8TE82 1336 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 NEMFO60524 1076 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 RABL6Q3YEC7 729 aaPredicted RBP16.18■□□□□ 0.18
VPS33A-208ENST00000543633 TPRNQ4KMQ1 711 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 SMARCC2Q8TAQ2 1214 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 ZNF609O15014 1411 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 PALLDQ8WX93 1383 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 RIOK3O14730 519 aaKnown RBP16.18■□□□□ 0.18
VPS33A-208ENST00000543633 BICD2Q8TD16 824 aa16.18■□□□□ 0.18
VPS33A-208ENST00000543633 DDX54Q8TDD1 881 aaKnown RBP16.18■□□□□ 0.18
VPS33A-208ENST00000543633 TNS3Q68CZ2 1445 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 SMTNL1A8MU46 457 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 ZNF165P49910 485 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 TNNI3KQ59H18 835 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 BRF1Q92994 677 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 PGBD1Q96JS3 809 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 FPGT-TNNI3KV9GXZ4 949 aa16.17■□□□□ 0.18
VPS33A-208ENST00000543633 SPATA31A3Q5VYP0 1347 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 RFX5P48382 616 aaPredicted RBP16.16■□□□□ 0.18
VPS33A-208ENST00000543633 CAMK4Q16566 473 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 FAM173BQ6P4H8 233 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 LMOD2Q6P5Q4 547 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 HAUS7Q99871 368 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms