RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 UBA7P41226 1012 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 TMOD2Q9NZR1 351 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 BICDL2A1A5D9 508 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 ZSCAN22P10073 491 aaPredicted RBP22.02■■□□□ 1.12
HDAC4-215ENST00000543185 FAM114A2Q9NRY5 505 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 CTTNBP2Q8WZ74 1663 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 ZNF213O14771 459 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 C10orf67Q8IYJ2 551 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 SF3B2Q13435 895 aaKnown RBP22.02■■□□□ 1.12
HDAC4-215ENST00000543185 CCDC174Q6PII3 467 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 TRIM47Q96LD4 638 aa22.02■■□□□ 1.12
HDAC4-215ENST00000543185 USP5P45974 858 aa22.01■■□□□ 1.11
HDAC4-215ENST00000543185 ZNF530Q6P9A1 599 aaPredicted RBP22.01■■□□□ 1.11
HDAC4-215ENST00000543185 PHLDB2Q86SQ0 1253 aa22.01■■□□□ 1.11
HDAC4-215ENST00000543185 ATL3Q6DD88 541 aa22.01■■□□□ 1.11
HDAC4-215ENST00000543185 CNGA4Q8IV77 575 aa22.01■■□□□ 1.11
HDAC4-215ENST00000543185 VPS18Q9P253 973 aa22.01■■□□□ 1.11
HDAC4-215ENST00000543185 HCLS1P14317 486 aaPredicted RBP22■■□□□ 1.11
HDAC4-215ENST00000543185 CNGA1P29973 690 aa22■■□□□ 1.11
HDAC4-215ENST00000543185 ANO6Q4KMQ2 910 aa22■■□□□ 1.11
HDAC4-215ENST00000543185 C11orf95C9JLR9 678 aaPredicted RBP22■■□□□ 1.11
HDAC4-215ENST00000543185 TNNC1P63316 161 aa22■■□□□ 1.11
HDAC4-215ENST00000543185 RTEL1-TNFRSF6BF6WH68 1400 aa22■■□□□ 1.11
HDAC4-215ENST00000543185 ARID4AP29374 1257 aaPredicted RBP22■■□□□ 1.11
HDAC4-215ENST00000543185 ARHGAP24Q8N264 748 aa22■■□□□ 1.11
HDAC4-215ENST00000543185 NDC80O14777 642 aa22■■□□□ 1.11
HDAC4-215ENST00000543185 DNAI1Q9UI46 699 aa21.99■■□□□ 1.11
HDAC4-215ENST00000543185 NBPF8Q3BBV2 869 aa21.99■■□□□ 1.11
HDAC4-215ENST00000543185 TBC1D9Q6ZT07 1266 aa21.99■■□□□ 1.11
HDAC4-215ENST00000543185 MKNK2Q9HBH9 465 aa21.99■■□□□ 1.11
HDAC4-215ENST00000543185 SNX21Q969T3 373 aa21.99■■□□□ 1.11
HDAC4-215ENST00000543185 PSMA7O14818 248 aa21.99■■□□□ 1.11
HDAC4-215ENST00000543185 TMPOP42166 694 aaKnown RBP21.99■■□□□ 1.11
HDAC4-215ENST00000543185 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.99■■□□□ 1.11
HDAC4-215ENST00000543185 GPR161Q8N6U8 529 aaKnown RBP21.99■■□□□ 1.11
HDAC4-215ENST00000543185 CFAP58Q5T655 872 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 FYB2Q5VWT5 728 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 TBCAO75347 108 aaKnown RBP21.98■■□□□ 1.11
HDAC4-215ENST00000543185 STARD3NLO95772 234 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 SYCP3Q8IZU3 236 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 CC2D2AQ9P2K1 1620 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 CASQ2O14958 399 aaPredicted RBP21.98■■□□□ 1.11
HDAC4-215ENST00000543185 PDE4BQ07343 736 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 RBM5P52756 815 aaKnown RBP eCLIP21.98■■□□□ 1.111e-6■■■□□ 17.2
HDAC4-215ENST00000543185 AFAP1L1Q8TED9 768 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 PRC1O43663 620 aa21.98■■□□□ 1.11
HDAC4-215ENST00000543185 FEZ2Q9UHY8 353 aaPredicted RBP21.98■■□□□ 1.11
HDAC4-215ENST00000543185 GIGYF1O75420 1035 aaPredicted RBP21.97■■□□□ 1.11
HDAC4-215ENST00000543185 RARSP54136 660 aaKnown RBP21.97■■□□□ 1.11
HDAC4-215ENST00000543185 SPAG5Q96R06 1193 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 SPATS2Q86XZ4 545 aaKnown RBP21.97■■□□□ 1.11
HDAC4-215ENST00000543185 ODF2LQ9ULJ1 636 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 KIF21AQ7Z4S6 1674 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 NBPF7P0C2Y1 421 aaPredicted RBP21.97■■□□□ 1.11
HDAC4-215ENST00000543185 TCERG1LQ5VWI1 586 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 BICDL1Q6ZP65 573 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 CEP120Q8N960 986 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 SMC1BQ8NDV3 1235 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 MYO1BO43795 1136 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 SYNCQ9H7C4 482 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 EXOC6BQ9Y2D4 811 aa21.97■■□□□ 1.11
HDAC4-215ENST00000543185 STAT6P42226 847 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 TMTC2Q8N394 836 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 MPHOSPH6Q99547 160 aaKnown RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 TRAF1Q13077 416 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 METTL24Q5JXM2 366 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 MAP3K1Q13233 1512 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 BUB1BO60566 1050 aaPredicted RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 MSANTD4Q8NCY6 345 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 NKIRAS1Q9NYS0 192 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 RBM27Q9P2N5 1060 aaKnown RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 CPLX3Q8WVH0 158 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 IFIT1P09914 478 aaKnown RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 INTS8Q75QN2 995 aaKnown RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 MYL6BP14649 208 aa21.96■■□□□ 1.11
HDAC4-215ENST00000543185 IARSP41252 1262 aaKnown RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 RPUSD2Q8IZ73 545 aaKnown RBP21.96■■□□□ 1.11
HDAC4-215ENST00000543185 ANKRD24Q8TF21 1146 aa21.95■■□□□ 1.11
HDAC4-215ENST00000543185 ZFP91Q96JP5 570 aaPredicted RBP21.95■■□□□ 1.11
HDAC4-215ENST00000543185 PCF11O94913 1555 aaKnown RBP21.95■■□□□ 1.1
HDAC4-215ENST00000543185 CCDC38Q502W7 563 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 CFAP157Q5JU67 520 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 SYNJ1O43426 1573 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 ZNF853P0CG23 659 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 PSMC4P43686 418 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 METAP2P50579 478 aaKnown RBP eCLIP21.95■■□□□ 1.1
HDAC4-215ENST00000543185 NLRP5P59047 1200 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 TRIM14Q14142 442 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 RTL1A6NKG5 1358 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 SLC5A1P13866 664 aa21.95■■□□□ 1.1
HDAC4-215ENST00000543185 TPD52P55327 224 aaPredicted RBP21.95■■□□□ 1.1
HDAC4-215ENST00000543185 MRPS27Q92552 414 aaKnown RBP21.95■■□□□ 1.1
HDAC4-215ENST00000543185 RASSF2P50749 326 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 GOLGA8AA7E2F4 631 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 SLC52A1Q9NWF4 448 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 KRT13P13646 458 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 CSRNP2Q9H175 543 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 ERO1AQ96HE7 468 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 TXNDC16Q9P2K2 825 aa21.94■■□□□ 1.1
HDAC4-215ENST00000543185 ZEB2O60315 1214 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms