RNA–Protein interactions for RNA: ENST00000543170.5

COPS7A-216, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 2

Gene COPS7A, Length 552 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-216ENST00000543170 CTSWP56202 376 aa23.29■■□□□ 1.32
COPS7A-216ENST00000543170 CCDC152Q4G0S7 254 aa23.29■■□□□ 1.32
COPS7A-216ENST00000543170 CC2D2BQ6DHV5 1058 aa23.29■■□□□ 1.32
COPS7A-216ENST00000543170 RTL9Q8NET4 1388 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 TAF1P21675 1872 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 NFKBIEO00221 500 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 GRM8O00222 908 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 BBOX1O75936 387 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 YY1P25490 414 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 GRIPAP1Q4V328 841 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 TMC4Q7Z404 712 aa23.28■■□□□ 1.32
COPS7A-216ENST00000543170 JARID2Q92833 1246 aaPredicted RBP23.27■■□□□ 1.32
COPS7A-216ENST00000543170 DICER1Q9UPY3 1922 aaKnown RBP23.26■■□□□ 1.31
COPS7A-216ENST00000543170 IPO8O15397 1037 aaKnown RBP23.26■■□□□ 1.31
COPS7A-216ENST00000543170 RTKN2Q8IZC4 609 aa23.26■■□□□ 1.31
COPS7A-216ENST00000543170 TAOK3Q9H2K8 898 aa23.26■■□□□ 1.31
COPS7A-216ENST00000543170 ZNF219Q9P2Y4 722 aaPredicted RBP23.26■■□□□ 1.31
COPS7A-216ENST00000543170 UTYO14607 1347 aa23.26■■□□□ 1.31
COPS7A-216ENST00000543170 BCAR3O75815 825 aa23.25■■□□□ 1.31
COPS7A-216ENST00000543170 CCT4P50991 539 aaKnown RBP23.25■■□□□ 1.31
COPS7A-216ENST00000543170 RASSF7Q02833 373 aa23.25■■□□□ 1.31
COPS7A-216ENST00000543170 ATP6V0A2Q9Y487 856 aa23.25■■□□□ 1.31
COPS7A-216ENST00000543170 CCDC88AQ3V6T2 1871 aa23.25■■□□□ 1.31
COPS7A-216ENST00000543170 COL4A1P02462 1669 aa23.25■■□□□ 1.31
COPS7A-216ENST00000543170 TTLL11Q8NHH1 800 aa23.24■■□□□ 1.31
COPS7A-216ENST00000543170 C9orf78Q9NZ63 289 aaPredicted RBP23.24■■□□□ 1.31
COPS7A-216ENST00000543170 TIAM2Q8IVF5 1701 aa23.24■■□□□ 1.31
COPS7A-216ENST00000543170 LMNB1P20700 586 aa23.23■■□□□ 1.31
COPS7A-216ENST00000543170 FKBP4Q02790 459 aaKnown RBP eCLIP23.23■■□□□ 1.31
COPS7A-216ENST00000543170 PSMD1Q99460 953 aa23.23■■□□□ 1.31
COPS7A-216ENST00000543170 ZC3H4Q9UPT8 1303 aaKnown RBP23.23■■□□□ 1.31
COPS7A-216ENST00000543170 CSF1RP07333 972 aa23.22■■□□□ 1.31
COPS7A-216ENST00000543170 ATF7IPQ6VMQ6 1270 aa23.22■■□□□ 1.31
COPS7A-216ENST00000543170 SP8Q8IXZ3 490 aa23.22■■□□□ 1.31
COPS7A-216ENST00000543170 CELF1Q92879 486 aaKnown RBP23.22■■□□□ 1.31
COPS7A-216ENST00000543170 TMX4Q9H1E5 349 aaPredicted RBP23.22■■□□□ 1.31
COPS7A-216ENST00000543170 TRIM27P14373 513 aa23.21■■□□□ 1.31
COPS7A-216ENST00000543170 C9orf131Q5VYM1 1079 aa23.21■■□□□ 1.31
COPS7A-216ENST00000543170 OLFM4Q6UX06 510 aa23.21■■□□□ 1.31
COPS7A-216ENST00000543170 LTBP1Q14766 1721 aa23.2■■□□□ 1.3
COPS7A-216ENST00000543170 PRELPP51888 382 aa23.2■■□□□ 1.3
COPS7A-216ENST00000543170 RPS8P62241 208 aaKnown RBP23.2■■□□□ 1.3
COPS7A-216ENST00000543170 ZKSCAN2Q63HK3 967 aa23.2■■□□□ 1.3
COPS7A-216ENST00000543170 CDC5LQ99459 802 aaKnown RBP23.2■■□□□ 1.3
COPS7A-216ENST00000543170 SEC31BQ9NQW1 1179 aa23.2■■□□□ 1.3
COPS7A-216ENST00000543170 RNF181Q9P0P0 153 aa23.2■■□□□ 1.3
COPS7A-216ENST00000543170 NBPF7P0C2Y1 421 aaPredicted RBP23.19■■□□□ 1.3
COPS7A-216ENST00000543170 FOXO4P98177 505 aa23.19■■□□□ 1.3
COPS7A-216ENST00000543170 INTS3Q68E01 1043 aaKnown RBP23.19■■□□□ 1.3
COPS7A-216ENST00000543170 FRAT1Q92837 279 aaPredicted RBP23.19■■□□□ 1.3
COPS7A-216ENST00000543170 GREM2Q9H772 168 aa23.19■■□□□ 1.3
COPS7A-216ENST00000543170 SPEF2Q9C093 1822 aa23.18■■□□□ 1.3
COPS7A-216ENST00000543170 ANKRD18AQ8IVF6 992 aa23.18■■□□□ 1.3
COPS7A-216ENST00000543170 CCDC85AQ96PX6 553 aaPredicted RBP23.18■■□□□ 1.3
COPS7A-216ENST00000543170 USP44Q9H0E7 712 aa23.18■■□□□ 1.3
COPS7A-216ENST00000543170 DUOX1Q9NRD9 1551 aa23.18■■□□□ 1.3
COPS7A-216ENST00000543170 SUCLG2Q96I99 432 aa23.17■■□□□ 1.3
COPS7A-216ENST00000543170 FAM161AQ3B820 660 aa23.16■■□□□ 1.3
COPS7A-216ENST00000543170 SLC51AQ86UW1 340 aa23.16■■□□□ 1.3
COPS7A-216ENST00000543170 RTFDC1Q9BY42 306 aaPredicted RBP23.16■■□□□ 1.3
COPS7A-216ENST00000543170 ITGA6P23229 1130 aa23.15■■□□□ 1.3
COPS7A-216ENST00000543170 RABL6Q3YEC7 729 aaPredicted RBP23.15■■□□□ 1.3
COPS7A-216ENST00000543170 EPHA10Q5JZY3 1008 aa23.15■■□□□ 1.3
COPS7A-216ENST00000543170 SUPT20HQ8NEM7 779 aa23.15■■□□□ 1.3
COPS7A-216ENST00000543170 KAZALD1Q96I82 304 aa23.15■■□□□ 1.3
COPS7A-216ENST00000543170 VPS33BQ9H267 617 aa23.15■■□□□ 1.3
COPS7A-216ENST00000543170 MPNDQ8N594 471 aa23.14■■□□□ 1.29
COPS7A-216ENST00000543170 BSDC1Q9NW68 430 aaPredicted RBP23.14■■□□□ 1.29
COPS7A-216ENST00000543170 RCAN3Q9UKA8 241 aa23.14■■□□□ 1.29
COPS7A-216ENST00000543170 ANKRD18BA2A2Z9 1011 aa23.13■■□□□ 1.29
COPS7A-216ENST00000543170 IARSP41252 1262 aaKnown RBP23.13■■□□□ 1.29
COPS7A-216ENST00000543170 LMBR1LQ6UX01 489 aa23.13■■□□□ 1.29
COPS7A-216ENST00000543170 DPP8Q6V1X1 898 aaPredicted RBP23.13■■□□□ 1.29
COPS7A-216ENST00000543170 ZNF277Q9NRM2 450 aaPredicted RBP23.13■■□□□ 1.29
COPS7A-216ENST00000543170 HDAC5Q9UQL6 1122 aa23.13■■□□□ 1.29
COPS7A-216ENST00000543170 IGHMBP2P38935 993 aaKnown RBP23.12■■□□□ 1.29
COPS7A-216ENST00000543170 IFIT5Q13325 482 aaKnown RBP23.12■■□□□ 1.29
COPS7A-216ENST00000543170 ZNF784Q8NCA9 323 aaPredicted RBP23.12■■□□□ 1.29
COPS7A-216ENST00000543170 YTHDC1Q96MU7 727 aaKnown RBP23.12■■□□□ 1.29
COPS7A-216ENST00000543170 BICC1Q9H694 974 aaKnown RBP23.12■■□□□ 1.29
COPS7A-216ENST00000543170 PODXL2Q9NZ53 605 aa23.12■■□□□ 1.29
COPS7A-216ENST00000543170 UBTFL1P0CB47 393 aaPredicted RBP23.11■■□□□ 1.29
COPS7A-216ENST00000543170 TNNQ9UQP3 1299 aa23.11■■□□□ 1.29
COPS7A-216ENST00000543170 A0A1B0GUL6 1792 aa23.11■■□□□ 1.29
COPS7A-216ENST00000543170 CCDC57Q2TAC2 916 aa23.1■■□□□ 1.29
COPS7A-216ENST00000543170 FTSJ3Q8IY81 847 aaKnown RBP23.1■■□□□ 1.29
COPS7A-216ENST00000543170 DZIP1LQ8IYY4 767 aaKnown RBP23.1■■□□□ 1.29
COPS7A-216ENST00000543170 ANKRD44Q8N8A2 993 aa23.1■■□□□ 1.29
COPS7A-216ENST00000543170 CLUAP1Q96AJ1 413 aa23.1■■□□□ 1.29
COPS7A-216ENST00000543170 CHMP3Q9Y3E7 222 aa23.1■■□□□ 1.29
COPS7A-216ENST00000543170 GPSM2P81274 684 aa23.09■■□□□ 1.29
COPS7A-216ENST00000543170 COL4A5P29400 1685 aa23.09■■□□□ 1.29
COPS7A-216ENST00000543170 XDHP47989 1333 aa23.08■■□□□ 1.29
COPS7A-216ENST00000543170 GNAI3P08754 354 aa23.08■■□□□ 1.29
COPS7A-216ENST00000543170 TMEM57Q8N5G2 664 aa23.08■■□□□ 1.29
COPS7A-216ENST00000543170 MPHOSPH8Q99549 860 aa23.08■■□□□ 1.29
COPS7A-216ENST00000543170 MEIS3Q99687 375 aa23.08■■□□□ 1.29
COPS7A-216ENST00000543170 NSFL1CQ9UNZ2 370 aaKnown RBP23.08■■□□□ 1.29
COPS7A-216ENST00000543170 MS4A1P11836 297 aa23.07■■□□□ 1.28
COPS7A-216ENST00000543170 KIAA2012Q0VF49 1180 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms