RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 NEURL1BA8MQ27 555 aa15.76■□□□□ 0.11
VPS33A-207ENST00000542790 F6X3S4 739 aa15.76■□□□□ 0.11
VPS33A-207ENST00000542790 CWF19L2Q2TBE0 894 aaKnown RBP15.76■□□□□ 0.11
VPS33A-207ENST00000542790 RTL5Q5HYW3 569 aaPredicted RBP15.76■□□□□ 0.11
VPS33A-207ENST00000542790 RBM17Q96I25 401 aaKnown RBP15.76■□□□□ 0.11
VPS33A-207ENST00000542790 IRS4O14654 1257 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-207ENST00000542790 RARSP54136 660 aaKnown RBP15.75■□□□□ 0.11
VPS33A-207ENST00000542790 BRPF1P55201 1214 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-207ENST00000542790 PRPF40BQ6NWY9 871 aaKnown RBP15.75■□□□□ 0.11
VPS33A-207ENST00000542790 ARHGAP27Q6ZUM4 889 aa15.75■□□□□ 0.11
VPS33A-207ENST00000542790 C3orf67Q6ZVT6 689 aa15.75■□□□□ 0.11
VPS33A-207ENST00000542790 NUP98P52948 1817 aa15.75■□□□□ 0.11
VPS33A-207ENST00000542790 GCKRQ14397 625 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 BEND3Q5T5X7 828 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 SOGA3Q5TF21 947 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 SLC4A10Q6U841 1118 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 FAM212AQ96EL1 285 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 KIF12Q96FN5 646 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 CRAMP1Q96RY5 1269 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 KIAA1551Q9HCM1 1747 aa15.74■□□□□ 0.11
VPS33A-207ENST00000542790 H7C1W4 665 aa15.73■□□□□ 0.11
VPS33A-207ENST00000542790 C21orf2O43822 256 aa15.73■□□□□ 0.11
VPS33A-207ENST00000542790 SF3B3Q15393 1217 aaKnown RBP15.73■□□□□ 0.11
VPS33A-207ENST00000542790 CDHR2Q9BYE9 1310 aa15.72■□□□□ 0.11
VPS33A-207ENST00000542790 PDE8AO60658 829 aa15.72■□□□□ 0.11
VPS33A-207ENST00000542790 ALDH1L1O75891 902 aa15.72■□□□□ 0.11
VPS33A-207ENST00000542790 POTEIP0CG38 1075 aa15.72■□□□□ 0.11
VPS33A-207ENST00000542790 DDX46Q7L014 1031 aaKnown RBP15.72■□□□□ 0.11
VPS33A-207ENST00000542790 JARID2Q92833 1246 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-207ENST00000542790 SRCIN1Q9C0H9 1055 aa15.72■□□□□ 0.11
VPS33A-207ENST00000542790 NOB1Q9ULX3 412 aaKnown RBP15.72■□□□□ 0.11
VPS33A-207ENST00000542790 BBOX1O75936 387 aa15.71■□□□□ 0.11
VPS33A-207ENST00000542790 UBE3BQ7Z3V4 1068 aa15.71■□□□□ 0.11
VPS33A-207ENST00000542790 C7orf43Q8WVR3 580 aa15.71■□□□□ 0.11
VPS33A-207ENST00000542790 ARHGAP45Q92619 1136 aa15.71■□□□□ 0.11
VPS33A-207ENST00000542790 MS4A3Q96HJ5 214 aa15.71■□□□□ 0.11
VPS33A-207ENST00000542790 API5Q9BZZ5 524 aaKnown RBP15.71■□□□□ 0.11
VPS33A-207ENST00000542790 N4BP2Q86UW6 1770 aaPredicted RBP15.71■□□□□ 0.11
VPS33A-207ENST00000542790 KIF16BQ96L93 1317 aa15.7■□□□□ 0.1
VPS33A-207ENST00000542790 IPO8O15397 1037 aaKnown RBP15.7■□□□□ 0.1
VPS33A-207ENST00000542790 CC2D2BQ6DHV5 1058 aa15.7■□□□□ 0.1
VPS33A-207ENST00000542790 ARFGEF2Q9Y6D5 1785 aa15.7■□□□□ 0.1
VPS33A-207ENST00000542790 YY1P25490 414 aa15.69■□□□□ 0.1
VPS33A-207ENST00000542790 CCDC152Q4G0S7 254 aa15.69■□□□□ 0.1
VPS33A-207ENST00000542790 DCAF8Q5TAQ9 597 aa15.69■□□□□ 0.1
VPS33A-207ENST00000542790 SPOCK2Q92563 424 aa15.69■□□□□ 0.1
VPS33A-207ENST00000542790 TMX4Q9H1E5 349 aaPredicted RBP15.69■□□□□ 0.1
VPS33A-207ENST00000542790 C9orf78Q9NZ63 289 aaPredicted RBP15.69■□□□□ 0.1
VPS33A-207ENST00000542790 ANKRD31Q8N7Z5 1873 aa15.69■□□□□ 0.1
VPS33A-207ENST00000542790 ABCC4O15439 1325 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 ANKRD36CQ5JPF3 1778 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 GRM8O00222 908 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 PPEF1O14829 653 aaPredicted RBP15.68■□□□□ 0.1
VPS33A-207ENST00000542790 MAP3K13O43283 966 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 BCAR3O75815 825 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 GRAPQ13588 217 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 GRIPAP1Q4V328 841 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 CCDC93Q567U6 631 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 RTKN2Q8IZC4 609 aa15.68■□□□□ 0.1
VPS33A-207ENST00000542790 GRAPLQ8TC17 118 aaPredicted RBP15.68■□□□□ 0.1
VPS33A-207ENST00000542790 CCT4P50991 539 aaKnown RBP15.67■□□□□ 0.1
VPS33A-207ENST00000542790 CASP7P55210 303 aa15.67■□□□□ 0.1
VPS33A-207ENST00000542790 CTSWP56202 376 aa15.67■□□□□ 0.1
VPS33A-207ENST00000542790 TMC4Q7Z404 712 aa15.67■□□□□ 0.1
VPS33A-207ENST00000542790 PLA2G12BQ9BX93 195 aa15.67■□□□□ 0.1
VPS33A-207ENST00000542790 ATP6V0A2Q9Y487 856 aa15.67■□□□□ 0.1
VPS33A-207ENST00000542790 TNRC6CQ9HCJ0 1690 aaKnown RBP15.67■□□□□ 0.1
VPS33A-207ENST00000542790 NFKBIEO00221 500 aa15.66■□□□□ 0.1
VPS33A-207ENST00000542790 SP8Q8IXZ3 490 aa15.66■□□□□ 0.1
VPS33A-207ENST00000542790 TTLL11Q8NHH1 800 aa15.66■□□□□ 0.1
VPS33A-207ENST00000542790 FRAT1Q92837 279 aaPredicted RBP15.66■□□□□ 0.1
VPS33A-207ENST00000542790 TAOK3Q9H2K8 898 aa15.66■□□□□ 0.1
VPS33A-207ENST00000542790 LMNB1P20700 586 aa15.65■□□□□ 0.1
VPS33A-207ENST00000542790 RPS8P62241 208 aaKnown RBP15.65■□□□□ 0.1
VPS33A-207ENST00000542790 COL11A2P13942 1736 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-207ENST00000542790 LTBP3Q9NS15 1303 aa15.65■□□□□ 0.1
VPS33A-207ENST00000542790 FKBP4Q02790 459 aaKnown RBP eCLIP15.64■□□□□ 0.09
VPS33A-207ENST00000542790 RASSF7Q02833 373 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 C9orf131Q5VYM1 1079 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 ZKSCAN2Q63HK3 967 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 OLFM4Q6UX06 510 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 ATF7IPQ6VMQ6 1270 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 CELF1Q92879 486 aaKnown RBP15.64■□□□□ 0.09
VPS33A-207ENST00000542790 YTHDC1Q96MU7 727 aaKnown RBP15.64■□□□□ 0.09
VPS33A-207ENST00000542790 CCDC85AQ96PX6 553 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-207ENST00000542790 DLEC1Q9Y238 1755 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 UTYO14607 1347 aa15.64■□□□□ 0.09
VPS33A-207ENST00000542790 CSF1RP07333 972 aa15.63■□□□□ 0.09
VPS33A-207ENST00000542790 NBPF7P0C2Y1 421 aaPredicted RBP15.63■□□□□ 0.09
VPS33A-207ENST00000542790 CDC5LQ99459 802 aaKnown RBP15.63■□□□□ 0.09
VPS33A-207ENST00000542790 SEC31BQ9NQW1 1179 aa15.63■□□□□ 0.09
VPS33A-207ENST00000542790 RNF181Q9P0P0 153 aa15.63■□□□□ 0.09
VPS33A-207ENST00000542790 BRCA1P38398 1863 aaKnown RBP15.63■□□□□ 0.09
VPS33A-207ENST00000542790 RTL9Q8NET4 1388 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 CACNA1FO60840 1977 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 TRIM27P14373 513 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 FOXO4P98177 505 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 ANKRD18AQ8IVF6 992 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 PSMD1Q99460 953 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 USP44Q9H0E7 712 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms