RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 MYO1CO00159 1063 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 HTATSF1O43719 755 aaKnown RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 FKBP5Q13451 457 aaPredicted RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 ZSCAN26Q16670 478 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 C1orf141Q5JVX7 400 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 FOXD4L5Q5VV16 416 aaPredicted RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 TTC19Q6DKK2 380 aaPredicted RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 ACRBPQ8NEB7 543 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 FOXD4L4Q8WXT5 416 aaPredicted RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 GCC1Q96CN9 775 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 SSFA2P28290 1259 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 FLIIQ13045 1269 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 TRDNQ13061 729 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 TAF7Q15545 349 aaPredicted RBP13.13□□□□□ -0.31
CDH3-203ENST00000542274 ZRSR2Q15696 482 aaKnown RBP13.13□□□□□ -0.31
CDH3-203ENST00000542274 MFSD4BQ5TF39 518 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 C22orf23Q9BZE7 217 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 NOLC1Q14978 699 aaKnown RBP eCLIP13.13□□□□□ -0.31
CDH3-203ENST00000542274 AKAP4Q5JQC9 854 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 MKL1Q969V6 931 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 SUDS3Q9H7L9 328 aaPredicted RBP13.13□□□□□ -0.31
CDH3-203ENST00000542274 CTNNA3Q9UI47 895 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 PTPRCP08575 1304 aa13.13□□□□□ -0.31
CDH3-203ENST00000542274 GSPT1P15170 499 aaKnown RBP13.12□□□□□ -0.31
CDH3-203ENST00000542274 UVSSAQ2YD98 709 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 TOM1L2Q6ZVM7 507 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 ANKRD44Q8N8A2 993 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 TBC1D2Q9BYX2 928 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 MORC2Q9Y6X9 1032 aaPredicted RBP13.12□□□□□ -0.31
CDH3-203ENST00000542274 TATP17735 454 aaPredicted RBP13.12□□□□□ -0.31
CDH3-203ENST00000542274 MICALL1Q8N3F8 863 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 NFATC2IPQ8NCF5 419 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 STK31Q9BXU1 1019 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 ZNF446Q9NWS9 450 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 CYP2C19P33261 490 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 MAP2K2P36507 400 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 CHAF1AQ13111 956 aaPredicted RBP13.12□□□□□ -0.31
CDH3-203ENST00000542274 AMOTQ4VCS5 1084 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 CREBRFQ8IUR6 639 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 GOLGA6L1Q8N7Z2 621 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 DCTPP1Q9H773 170 aa13.12□□□□□ -0.31
CDH3-203ENST00000542274 CEMIPQ8WUJ3 1361 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 PRAMEF22A3QJZ6 481 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 RNMTO43148 476 aaKnown RBP13.11□□□□□ -0.31
CDH3-203ENST00000542274 TPD52L2O43399 206 aaKnown RBP13.11□□□□□ -0.31
CDH3-203ENST00000542274 ECEL1O95672 775 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 KIAA2012Q0VF49 1180 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 TEFQ10587 303 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 SYT10Q6XYQ8 523 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 TBC1D22AQ8WUA7 517 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 PDLIM2Q96JY6 352 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 COL5A2P05997 1499 aaPredicted RBP13.11□□□□□ -0.31
CDH3-203ENST00000542274 ANKRD33BA6NCL7 494 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 HDGFL1Q5TGJ6 251 aa13.11□□□□□ -0.31
CDH3-203ENST00000542274 LARP1Q6PKG0 1096 aaKnown RBP13.11□□□□□ -0.31
CDH3-203ENST00000542274 BRD1O95696 1058 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 FAM163BP0C2L3 166 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 SKILP12757 684 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 ABCD1P33897 745 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 PLEKHM2Q8IWE5 1019 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 KRT222Q8N1A0 295 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 ANKRD20A12PQ8NF67 263 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 ERCC4Q92889 916 aaPredicted RBP13.1□□□□□ -0.31
CDH3-203ENST00000542274 PAX3P23760 479 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 CCDC30Q5VVM6 783 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 TSHZ3Q63HK5 1081 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 SDR16C5Q8N3Y7 309 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 MAF1Q9H063 256 aa13.1□□□□□ -0.31
CDH3-203ENST00000542274 WDR17Q8IZU2 1322 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 HSP90AB1P08238 724 aaKnown RBP13.09□□□□□ -0.31
CDH3-203ENST00000542274 BMP2KLQ5H9B9 411 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 TBC1D9Q6ZT07 1266 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 GET4Q7L5D6 327 aaPredicted RBP13.09□□□□□ -0.31
CDH3-203ENST00000542274 KLHL23Q8NBE8 558 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 EXOC6BQ9Y2D4 811 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 KDM3BQ7LBC6 1761 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 CCDC196A0A1B0GTZ2 297 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 A0A1B0GUL7 405 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 ZNF232Q9UNY5 417 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 PHLPP1O60346 1717 aa13.09□□□□□ -0.31
CDH3-203ENST00000542274 PNMA6EA0A0J9YXQ4 647 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 BTBD11A6QL63 1104 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 RAD21O60216 631 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 EVA1CP58658 441 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 EIF4A1P60842 406 aaKnown RBP13.08□□□□□ -0.32
CDH3-203ENST00000542274 CHPF2Q9P2E5 772 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 MTMR7Q9Y216 660 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 ABCC6O95255 1503 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 AHDC1Q5TGY3 1603 aaPredicted RBP13.08□□□□□ -0.32
CDH3-203ENST00000542274 REC8O95072 547 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 BTG4Q9NY30 223 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 CCDC39Q9UFE4 941 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 LCMT1Q9UIC8 334 aa13.08□□□□□ -0.32
CDH3-203ENST00000542274 KDM6AO15550 1401 aaPredicted RBP13.07□□□□□ -0.32
CDH3-203ENST00000542274 CYP27B1O15528 508 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 PHKG2P15735 406 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 RIPOR2Q9Y4F9 1068 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 SCN11AQ9UI33 1791 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 ADAMTS2O95450 1211 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 TTC31Q49AM3 519 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms