RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 CDC45O75419 566 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 RLBP1P12271 317 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 NEUROD2Q15784 382 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 PRR5LQ6MZQ0 368 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 ZNF790Q6PG37 636 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 SYAP1Q96A49 352 aaPredicted RBP12.67□□□□□ -0.38
CHFR-219ENST00000541341 CACNA1FO60840 1977 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 ST18O60284 1047 aa12.66□□□□□ -0.38
CHFR-219ENST00000541341 MBD3O95983 291 aa12.66□□□□□ -0.38
CHFR-219ENST00000541341 TRIM27P14373 513 aa12.66□□□□□ -0.38
CHFR-219ENST00000541341 VEGFAP15692 232 aaPredicted RBP12.66□□□□□ -0.38
CHFR-219ENST00000541341 MCM10Q7L590 875 aa12.66□□□□□ -0.38
CHFR-219ENST00000541341 PKNOX2Q96KN3 472 aa12.66□□□□□ -0.38
CHFR-219ENST00000541341 API5Q9BZZ5 524 aaKnown RBP12.66□□□□□ -0.38
CHFR-219ENST00000541341 GZF1Q9H116 711 aaPredicted RBP12.66□□□□□ -0.38
CHFR-219ENST00000541341 BABAM1Q9NWV8 329 aa12.66□□□□□ -0.38
CHFR-219ENST00000541341 A0A087WZG4 1122 aa12.65□□□□□ -0.38
CHFR-219ENST00000541341 BTBD11A6QL63 1104 aa12.65□□□□□ -0.38
CHFR-219ENST00000541341 POTECB2RU33 542 aa12.65□□□□□ -0.38
CHFR-219ENST00000541341 ZNF853P0CG23 659 aa12.65□□□□□ -0.38
CHFR-219ENST00000541341 DCTN1Q14203 1278 aa12.65□□□□□ -0.38
CHFR-219ENST00000541341 ERFEQ4G0M1 354 aa12.65□□□□□ -0.38
CHFR-219ENST00000541341 DDX49Q9Y6V7 483 aaKnown RBP12.65□□□□□ -0.38
CHFR-219ENST00000541341 ZNF500O60304 480 aaPredicted RBP12.64□□□□□ -0.39
CHFR-219ENST00000541341 POTEIP0CG38 1075 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 POTEJP0CG39 1038 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 NCLP19338 710 aaKnown RBP12.64□□□□□ -0.39
CHFR-219ENST00000541341 GNAI1P63096 354 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 CNBD1Q8NA66 436 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 FMNL2Q96PY5 1086 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 SETDB2Q96T68 719 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 CCDC39Q9UFE4 941 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 USP16Q9Y5T5 823 aa12.64□□□□□ -0.39
CHFR-219ENST00000541341 EPB41L2O43491 1005 aaKnown RBP12.63□□□□□ -0.39
CHFR-219ENST00000541341 DDNO94850 711 aaPredicted RBP12.63□□□□□ -0.39
CHFR-219ENST00000541341 CAMTA2O94983 1202 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 REC8O95072 547 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 PDE6BP35913 854 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 IL6STP40189 918 aaPredicted RBP12.63□□□□□ -0.39
CHFR-219ENST00000541341 EXOSC9Q06265 439 aaKnown RBP12.63□□□□□ -0.39
CHFR-219ENST00000541341 INTS3Q68E01 1043 aaKnown RBP12.63□□□□□ -0.39
CHFR-219ENST00000541341 OLFM4Q6UX06 510 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 DZIP3Q86Y13 1208 aaKnown RBP12.63□□□□□ -0.39
CHFR-219ENST00000541341 JMYQ8N9B5 988 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 BRIP1Q9BX63 1249 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 IFT57Q9NWB7 429 aa12.63□□□□□ -0.39
CHFR-219ENST00000541341 SCN4AP35499 1836 aa12.62□□□□□ -0.39
CHFR-219ENST00000541341 CHL1O00533 1208 aa12.62□□□□□ -0.39
CHFR-219ENST00000541341 ST5P78524 1137 aa12.62□□□□□ -0.39
CHFR-219ENST00000541341 TAF7Q15545 349 aaPredicted RBP12.62□□□□□ -0.39
CHFR-219ENST00000541341 PRPF40BQ6NWY9 871 aaKnown RBP12.62□□□□□ -0.39
CHFR-219ENST00000541341 SSH1Q8WYL5 1049 aa12.62□□□□□ -0.39
CHFR-219ENST00000541341 THUMPD2Q9BTF0 503 aaKnown RBP12.62□□□□□ -0.39
CHFR-219ENST00000541341 MIS18AQ9NYP9 233 aa12.62□□□□□ -0.39
CHFR-219ENST00000541341 NOB1Q9ULX3 412 aaKnown RBP12.62□□□□□ -0.39
CHFR-219ENST00000541341 ZC3H4Q9UPT8 1303 aaKnown RBP12.62□□□□□ -0.39
CHFR-219ENST00000541341 DYNC1I1O14576 645 aa12.61□□□□□ -0.39
CHFR-219ENST00000541341 HSPA1AP0DMV8 641 aaKnown RBP12.61□□□□□ -0.39
CHFR-219ENST00000541341 HSPA1BP0DMV9 641 aaKnown RBP12.61□□□□□ -0.39
CHFR-219ENST00000541341 PDIA4P13667 645 aaKnown RBP12.61□□□□□ -0.39
CHFR-219ENST00000541341 DPY19L2Q6NUT2 758 aa12.61□□□□□ -0.39
CHFR-219ENST00000541341 TNS4Q8IZW8 715 aa12.61□□□□□ -0.39
CHFR-219ENST00000541341 FAM184AQ8NB25 1140 aa12.61□□□□□ -0.39
CHFR-219ENST00000541341 TEX13AQ9BXU3 409 aaPredicted RBP12.61□□□□□ -0.39
CHFR-219ENST00000541341 TAOK3Q9H2K8 898 aa12.61□□□□□ -0.39
CHFR-219ENST00000541341 MKRN1Q9UHC7 482 aaKnown RBP12.61□□□□□ -0.39
CHFR-219ENST00000541341 NOL7Q9UMY1 257 aaKnown RBP12.61□□□□□ -0.39
CHFR-219ENST00000541341 LETM1O95202 739 aaPredicted RBP12.6□□□□□ -0.39
CHFR-219ENST00000541341 HMGN5P82970 282 aaKnown RBP12.6□□□□□ -0.39
CHFR-219ENST00000541341 NBPF5PQ86XG9 351 aaPredicted RBP12.6□□□□□ -0.39
CHFR-219ENST00000541341 PANK2Q9BZ23 570 aa12.6□□□□□ -0.39
CHFR-219ENST00000541341 TAF1P21675 1872 aa12.59□□□□□ -0.39
CHFR-219ENST00000541341 BAG4O95429 457 aaKnown RBP12.59□□□□□ -0.39
CHFR-219ENST00000541341 TPM3P06753 285 aa12.59□□□□□ -0.39
CHFR-219ENST00000541341 SRGNP10124 158 aa12.59□□□□□ -0.39
CHFR-219ENST00000541341 KIAA1211Q6ZU35 1233 aa12.59□□□□□ -0.39
CHFR-219ENST00000541341 RPAP2Q8IXW5 612 aaPredicted RBP12.59□□□□□ -0.39
CHFR-219ENST00000541341 TMEM57Q8N5G2 664 aa12.59□□□□□ -0.39
CHFR-219ENST00000541341 NBPF26B4DH59 902 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 MCCP23508 829 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 UVSSAQ2YD98 709 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 ANKRD45Q5TZF3 282 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 NBPF10Q6P3W6 841 aaKnown RBP12.58□□□□□ -0.4
CHFR-219ENST00000541341 NBPF15Q8N660 670 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 CNKSR1Q969H4 720 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 MASTLQ96GX5 879 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 ZNF277Q9NRM2 450 aaPredicted RBP12.58□□□□□ -0.4
CHFR-219ENST00000541341 MBIPQ9NS73 344 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 LAMB2P55268 1798 aa12.58□□□□□ -0.4
CHFR-219ENST00000541341 HLFQ16534 295 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 EAPPQ56P03 285 aaPredicted RBP12.57□□□□□ -0.4
CHFR-219ENST00000541341 STYK1Q6J9G0 422 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 SLC51AQ86UW1 340 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 SPRYD3Q8NCJ5 442 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 BCL2L13Q9BXK5 485 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 TSPYL4Q9UJ04 414 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 NIP7Q9Y221 180 aaKnown RBP eCLIP12.57□□□□□ -0.4
CHFR-219ENST00000541341 ZNF541Q9H0D2 1346 aa12.57□□□□□ -0.4
CHFR-219ENST00000541341 ZBTB7BO15156 539 aaPredicted RBP12.56□□□□□ -0.4
CHFR-219ENST00000541341 HMMRO75330 724 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms