RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 NUTM1Q86Y26 1132 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 NLGN1Q8N2Q7 840 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 CCDC24Q8N4L8 307 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 BBXQ8WY36 941 aaPredicted RBP11.74□□□□□ -0.53
DDX55-208ENST00000541259 KAZALD1Q96I82 304 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 SUCLG2Q96I99 432 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 UTP14AQ9BVJ6 771 aaKnown RBP11.74□□□□□ -0.53
DDX55-208ENST00000541259 IBTKQ9P2D0 1353 aaPredicted RBP11.74□□□□□ -0.53
DDX55-208ENST00000541259 TAF1P21675 1872 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 HAX1O00165 279 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 POLRMTO00411 1230 aaKnown RBP11.73□□□□□ -0.53
DDX55-208ENST00000541259 GNAI3P08754 354 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 EPHA10Q5JZY3 1008 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 PPP1R42Q7Z4L9 355 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 ZBTB38Q8NAP3 1195 aaPredicted RBP11.73□□□□□ -0.53
DDX55-208ENST00000541259 NRXN2Q9P2S2 1712 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 PCDHB15Q9Y5E8 787 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 PCDHB13Q9Y5F0 798 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 GTF3C3Q9Y5Q9 886 aa11.73□□□□□ -0.53
DDX55-208ENST00000541259 LRRFIP2Q9Y608 721 aaKnown RBP11.73□□□□□ -0.53
DDX55-208ENST00000541259 ANKRD31Q8N7Z5 1873 aa11.72□□□□□ -0.53
DDX55-208ENST00000541259 CARMIL3Q8ND23 1372 aa11.72□□□□□ -0.53
DDX55-208ENST00000541259 ZBTB7AO95365 584 aa11.72□□□□□ -0.53
DDX55-208ENST00000541259 GNAI2P04899 355 aa11.72□□□□□ -0.53
DDX55-208ENST00000541259 SERPINB2P05120 415 aa11.72□□□□□ -0.53
DDX55-208ENST00000541259 HCLS1P14317 486 aaPredicted RBP11.72□□□□□ -0.53
DDX55-208ENST00000541259 ERFEQ4G0M1 354 aa11.72□□□□□ -0.53
DDX55-208ENST00000541259 NBPF5PQ86XG9 351 aaPredicted RBP11.72□□□□□ -0.53
DDX55-208ENST00000541259 SH3TC1Q8TE82 1336 aa11.71□□□□□ -0.53
DDX55-208ENST00000541259 STK25O00506 426 aa11.71□□□□□ -0.53
DDX55-208ENST00000541259 IRS4O14654 1257 aaPredicted RBP11.71□□□□□ -0.53
DDX55-208ENST00000541259 MMP10P09238 476 aa11.71□□□□□ -0.53
DDX55-208ENST00000541259 FOXO4P98177 505 aa11.71□□□□□ -0.53
DDX55-208ENST00000541259 HS6ST3Q8IZP7 471 aa11.71□□□□□ -0.53
DDX55-208ENST00000541259 SGIP1Q9BQI5 828 aa11.71□□□□□ -0.53
DDX55-208ENST00000541259 BICC1Q9H694 974 aaKnown RBP11.71□□□□□ -0.53
DDX55-208ENST00000541259 TNRC6CQ9HCJ0 1690 aaKnown RBP11.71□□□□□ -0.54
DDX55-208ENST00000541259 ABCC12Q96J65 1359 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 CDHR2Q9BYE9 1310 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 SOCS7O14512 581 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 PRR5LQ6MZQ0 368 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 TPTE2Q6XPS3 522 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 C3orf67Q6ZVT6 689 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 SIRT2Q8IXJ6 389 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 ANKRD44Q8N8A2 993 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
DDX55-208ENST00000541259 SLC16A10Q8TF71 515 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 KIF12Q96FN5 646 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 NYXQ9GZU5 481 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 CHMP4BQ9H444 224 aaKnown RBP11.7□□□□□ -0.54
DDX55-208ENST00000541259 SPEF2Q9C093 1822 aa11.7□□□□□ -0.54
DDX55-208ENST00000541259 MAP3K13O43283 966 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 GTF2E1P29083 439 aaPredicted RBP11.69□□□□□ -0.54
DDX55-208ENST00000541259 ATP8B2P98198 1209 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 SLC10A5Q5PT55 438 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 ERICH6BQ5W0A0 696 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 CEP85Q6P2H3 762 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 CNBD1Q8NA66 436 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 PHF12Q96QT6 1004 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 PCDHB8Q9UN66 801 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 PARP3Q9Y6F1 533 aa11.69□□□□□ -0.54
DDX55-208ENST00000541259 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.68□□□□□ -0.54
DDX55-208ENST00000541259 PNMA6EA0A0J9YXQ4 647 aa11.68□□□□□ -0.54
DDX55-208ENST00000541259 PDE8AO60658 829 aa11.68□□□□□ -0.54
DDX55-208ENST00000541259 AAMPQ13685 434 aa11.68□□□□□ -0.54
DDX55-208ENST00000541259 LMBR1LQ6UX01 489 aa11.68□□□□□ -0.54
DDX55-208ENST00000541259 ZFP91Q96JP5 570 aaPredicted RBP11.68□□□□□ -0.54
DDX55-208ENST00000541259 CCDC85AQ96PX6 553 aaPredicted RBP11.68□□□□□ -0.54
DDX55-208ENST00000541259 PLA2G12BQ9BX93 195 aa11.68□□□□□ -0.54
DDX55-208ENST00000541259 MTFR1LQ9H019 292 aa11.68□□□□□ -0.54
DDX55-208ENST00000541259 NPHP1O15259 732 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 IGHDP01880 384 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 CSF1RP07333 972 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 PDAP1Q13442 181 aaKnown RBP11.67□□□□□ -0.54
DDX55-208ENST00000541259 RABL6Q3YEC7 729 aaPredicted RBP11.67□□□□□ -0.54
DDX55-208ENST00000541259 B4GALNT3Q6L9W6 998 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 RPAP2Q8IXW5 612 aaPredicted RBP11.67□□□□□ -0.54
DDX55-208ENST00000541259 TTLL11Q8NHH1 800 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 PPP4R2Q9NY27 417 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 COL4A1P02462 1669 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 CACNA1SQ13698 1873 aa11.67□□□□□ -0.54
DDX55-208ENST00000541259 KIF13BQ9NQT8 1826 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 CTSWP56202 376 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 ST5P78524 1137 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 PLCB2Q00722 1185 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 HDAC5Q9UQL6 1122 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 STK24Q9Y6E0 443 aa11.66□□□□□ -0.54
DDX55-208ENST00000541259 COL11A2P13942 1736 aaPredicted RBP11.66□□□□□ -0.54
DDX55-208ENST00000541259 SRGAP3O43295 1099 aa11.65□□□□□ -0.54
DDX55-208ENST00000541259 RFX5P48382 616 aaPredicted RBP11.65□□□□□ -0.54
DDX55-208ENST00000541259 MTX1Q13505 466 aa11.65□□□□□ -0.54
DDX55-208ENST00000541259 FAM161AQ3B820 660 aa11.65□□□□□ -0.54
DDX55-208ENST00000541259 KLHDC4Q8TBB5 520 aa11.65□□□□□ -0.54
DDX55-208ENST00000541259 SSH3Q8TE77 659 aa11.65□□□□□ -0.54
DDX55-208ENST00000541259 GREM2Q9H772 168 aa11.65□□□□□ -0.54
DDX55-208ENST00000541259 RIC1Q4ADV7 1423 aa11.64□□□□□ -0.55
DDX55-208ENST00000541259 PTGER2P43116 358 aa11.64□□□□□ -0.55
DDX55-208ENST00000541259 SF3B3Q15393 1217 aaKnown RBP11.64□□□□□ -0.55
DDX55-208ENST00000541259 IFNL1Q8IU54 200 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms