RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 TMX4Q9H1E5 349 aaPredicted RBP23.66■■□□□ 1.38
VPS33A-205ENST00000541169 MYH3P11055 1940 aa23.66■■□□□ 1.38
VPS33A-205ENST00000541169 PRPF40BQ6NWY9 871 aaKnown RBP23.65■■□□□ 1.38
VPS33A-205ENST00000541169 RTL9Q8NET4 1388 aa23.65■■□□□ 1.38
VPS33A-205ENST00000541169 CTSWP56202 376 aa23.64■■□□□ 1.37
VPS33A-205ENST00000541169 YBX3P16989 372 aaKnown RBP eCLIP23.63■■□□□ 1.37
VPS33A-205ENST00000541169 DZIP1LQ8IYY4 767 aaKnown RBP23.63■■□□□ 1.37
VPS33A-205ENST00000541169 GNAI3P08754 354 aa23.62■■□□□ 1.37
VPS33A-205ENST00000541169 GRAPQ13588 217 aa23.62■■□□□ 1.37
VPS33A-205ENST00000541169 GRAPLQ8TC17 118 aaPredicted RBP23.62■■□□□ 1.37
VPS33A-205ENST00000541169 USP44Q9H0E7 712 aa23.62■■□□□ 1.37
VPS33A-205ENST00000541169 CSF1RP07333 972 aa23.61■■□□□ 1.37
VPS33A-205ENST00000541169 C3orf67Q6ZVT6 689 aa23.61■■□□□ 1.37
VPS33A-205ENST00000541169 TTLL11Q8NHH1 800 aa23.61■■□□□ 1.37
VPS33A-205ENST00000541169 CDC5LQ99459 802 aaKnown RBP23.61■■□□□ 1.37
VPS33A-205ENST00000541169 RTKN2Q8IZC4 609 aa23.6■■□□□ 1.37
VPS33A-205ENST00000541169 CHMP4BQ9H444 224 aaKnown RBP23.6■■□□□ 1.37
VPS33A-205ENST00000541169 NBPF7P0C2Y1 421 aaPredicted RBP23.59■■□□□ 1.37
VPS33A-205ENST00000541169 UBTFL1P0CB47 393 aaPredicted RBP23.59■■□□□ 1.37
VPS33A-205ENST00000541169 JARID2Q92833 1246 aaPredicted RBP23.59■■□□□ 1.37
VPS33A-205ENST00000541169 SLX4Q8IY92 1834 aa23.59■■□□□ 1.37
VPS33A-205ENST00000541169 PPEF1O14829 653 aaPredicted RBP23.58■■□□□ 1.37
VPS33A-205ENST00000541169 RPS8P62241 208 aaKnown RBP23.58■■□□□ 1.37
VPS33A-205ENST00000541169 PDE3AQ14432 1141 aa23.58■■□□□ 1.37
VPS33A-205ENST00000541169 CCDC93Q567U6 631 aa23.58■■□□□ 1.37
VPS33A-205ENST00000541169 C7orf43Q8WVR3 580 aa23.58■■□□□ 1.37
VPS33A-205ENST00000541169 CLUAP1Q96AJ1 413 aa23.58■■□□□ 1.37
VPS33A-205ENST00000541169 FOXO4P98177 505 aa23.57■■□□□ 1.36
VPS33A-205ENST00000541169 SP8Q8IXZ3 490 aa23.57■■□□□ 1.36
VPS33A-205ENST00000541169 ATP6V0A2Q9Y487 856 aa23.57■■□□□ 1.36
VPS33A-205ENST00000541169 CACNA1SQ13698 1873 aa23.57■■□□□ 1.36
VPS33A-205ENST00000541169 C21orf2O43822 256 aa23.56■■□□□ 1.36
VPS33A-205ENST00000541169 ARHGAP27Q6ZUM4 889 aa23.56■■□□□ 1.36
VPS33A-205ENST00000541169 ANKRD18AQ8IVF6 992 aa23.56■■□□□ 1.36
VPS33A-205ENST00000541169 WWC3Q9ULE0 1092 aa23.56■■□□□ 1.36
VPS33A-205ENST00000541169 LTBP3Q9NS15 1303 aa23.56■■□□□ 1.36
VPS33A-205ENST00000541169 IFIT5Q13325 482 aaKnown RBP23.55■■□□□ 1.36
VPS33A-205ENST00000541169 RABL6Q3YEC7 729 aaPredicted RBP23.55■■□□□ 1.36
VPS33A-205ENST00000541169 ANKRD18BA2A2Z9 1011 aa23.54■■□□□ 1.36
VPS33A-205ENST00000541169 CCDC57Q2TAC2 916 aa23.54■■□□□ 1.36
VPS33A-205ENST00000541169 LMBR1LQ6UX01 489 aa23.54■■□□□ 1.36
VPS33A-205ENST00000541169 TMEM57Q8N5G2 664 aa23.54■■□□□ 1.36
VPS33A-205ENST00000541169 ITGA6P23229 1130 aa23.53■■□□□ 1.36
VPS33A-205ENST00000541169 IGHMBP2P38935 993 aaKnown RBP23.53■■□□□ 1.36
VPS33A-205ENST00000541169 ITPRIPQ8IWB1 547 aa23.53■■□□□ 1.36
VPS33A-205ENST00000541169 SUCLG2Q96I99 432 aa23.53■■□□□ 1.36
VPS33A-205ENST00000541169 GREM2Q9H772 168 aa23.53■■□□□ 1.36
VPS33A-205ENST00000541169 SUPT20HQ8NEM7 779 aa23.52■■□□□ 1.36
VPS33A-205ENST00000541169 PSMD1Q99460 953 aa23.52■■□□□ 1.36
VPS33A-205ENST00000541169 VPS33BQ9H267 617 aa23.52■■□□□ 1.36
VPS33A-205ENST00000541169 BSDC1Q9NW68 430 aaPredicted RBP23.52■■□□□ 1.36
VPS33A-205ENST00000541169 CHD4Q14839 1912 aa23.52■■□□□ 1.36
VPS33A-205ENST00000541169 FER1L6Q2WGJ9 1857 aa23.51■■□□□ 1.35
VPS33A-205ENST00000541169 CELF1Q92879 486 aaKnown RBP23.51■■□□□ 1.35
VPS33A-205ENST00000541169 TAOK3Q9H2K8 898 aa23.51■■□□□ 1.35
VPS33A-205ENST00000541169 BICC1Q9H694 974 aaKnown RBP23.51■■□□□ 1.35
VPS33A-205ENST00000541169 DDX19BQ9UMR2 479 aa23.51■■□□□ 1.35
VPS33A-205ENST00000541169 GNAI2P04899 355 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 FAM161AQ3B820 660 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 KAZALD1Q96I82 304 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 MPHOSPH8Q99549 860 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 MEIS3Q99687 375 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 SEC31BQ9NQW1 1179 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 CHMP3Q9Y3E7 222 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 LRRC37AA6NMS7 1700 aa23.5■■□□□ 1.35
VPS33A-205ENST00000541169 RLBP1P12271 317 aa23.49■■□□□ 1.35
VPS33A-205ENST00000541169 FKBP4Q02790 459 aaKnown RBP eCLIP23.49■■□□□ 1.35
VPS33A-205ENST00000541169 MVPQ14764 893 aaKnown RBP23.49■■□□□ 1.35
VPS33A-205ENST00000541169 TAF7LQ5H9L4 462 aa23.49■■□□□ 1.35
VPS33A-205ENST00000541169 LMNB1P20700 586 aa23.48■■□□□ 1.35
VPS33A-205ENST00000541169 EPHA10Q5JZY3 1008 aa23.48■■□□□ 1.35
VPS33A-205ENST00000541169 CCDC85AQ96PX6 553 aaPredicted RBP23.48■■□□□ 1.35
VPS33A-205ENST00000541169 ZNF219Q9P2Y4 722 aaPredicted RBP23.48■■□□□ 1.35
VPS33A-205ENST00000541169 TNNQ9UQP3 1299 aa23.48■■□□□ 1.35
VPS33A-205ENST00000541169 ZBTB7BO15156 539 aaPredicted RBP23.47■■□□□ 1.35
VPS33A-205ENST00000541169 DPP8Q6V1X1 898 aaPredicted RBP23.47■■□□□ 1.35
VPS33A-205ENST00000541169 MPNDQ8N594 471 aa23.47■■□□□ 1.35
VPS33A-205ENST00000541169 ANKRD44Q8N8A2 993 aa23.47■■□□□ 1.35
VPS33A-205ENST00000541169 PANK1Q8TE04 598 aa23.47■■□□□ 1.35
VPS33A-205ENST00000541169 RTFDC1Q9BY42 306 aaPredicted RBP23.47■■□□□ 1.35
VPS33A-205ENST00000541169 ZC3H4Q9UPT8 1303 aaKnown RBP23.47■■□□□ 1.35
VPS33A-205ENST00000541169 TAF1P21675 1872 aa23.46■■□□□ 1.35
VPS33A-205ENST00000541169 RRP1P56182 461 aaKnown RBP23.46■■□□□ 1.35
VPS33A-205ENST00000541169 ANKRD2Q9GZV1 360 aa23.46■■□□□ 1.35
VPS33A-205ENST00000541169 PODXL2Q9NZ53 605 aa23.46■■□□□ 1.35
VPS33A-205ENST00000541169 FBXO3Q9UK99 471 aa23.46■■□□□ 1.35
VPS33A-205ENST00000541169 LRRFIP2Q9Y608 721 aaKnown RBP23.46■■□□□ 1.35
VPS33A-205ENST00000541169 SNED1Q8TER0 1413 aa23.45■■□□□ 1.34
VPS33A-205ENST00000541169 NFKBIEO00221 500 aa23.45■■□□□ 1.34
VPS33A-205ENST00000541169 PLIN1O60240 522 aa23.45■■□□□ 1.34
VPS33A-205ENST00000541169 MTX1Q13505 466 aa23.45■■□□□ 1.34
VPS33A-205ENST00000541169 XDHP47989 1333 aa23.43■■□□□ 1.34
VPS33A-205ENST00000541169 LDHAL6AQ6ZMR3 332 aa23.43■■□□□ 1.34
VPS33A-205ENST00000541169 ANKIB1Q9P2G1 1089 aa23.43■■□□□ 1.34
VPS33A-205ENST00000541169 NSFL1CQ9UNZ2 370 aaKnown RBP23.43■■□□□ 1.34
VPS33A-205ENST00000541169 SBF1O95248 1867 aa23.43■■□□□ 1.34
VPS33A-205ENST00000541169 GOLGB1Q14789 3259 aaKnown RBP23.42■■□□□ 1.34
VPS33A-205ENST00000541169 EYA3Q99504 573 aa23.42■■□□□ 1.34
VPS33A-205ENST00000541169 MINPP1Q9UNW1 487 aa23.42■■□□□ 1.34
VPS33A-205ENST00000541169 COG6Q9Y2V7 657 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms