RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 CHRNA5P30532 468 aa13.36□□□□□ -0.27
ATL3-204ENST00000540699 CWF19L2Q2TBE0 894 aaKnown RBP13.36□□□□□ -0.27
ATL3-204ENST00000540699 C2CD5Q86YS7 1000 aa13.36□□□□□ -0.27
ATL3-204ENST00000540699 SYNE4Q8N205 404 aa13.36□□□□□ -0.27
ATL3-204ENST00000540699 TMEM57Q8N5G2 664 aa13.36□□□□□ -0.27
ATL3-204ENST00000540699 PIM2Q9P1W9 311 aa13.36□□□□□ -0.27
ATL3-204ENST00000540699 SLX4Q8IY92 1834 aa13.36□□□□□ -0.27
ATL3-204ENST00000540699 CASP7P55210 303 aa13.35□□□□□ -0.27
ATL3-204ENST00000540699 STYK1Q6J9G0 422 aa13.35□□□□□ -0.27
ATL3-204ENST00000540699 FAM89AQ96GI7 184 aa13.35□□□□□ -0.27
ATL3-204ENST00000540699 CCDC136Q96JN2 1154 aa13.35□□□□□ -0.27
ATL3-204ENST00000540699 TAF1P21675 1872 aa13.35□□□□□ -0.27
ATL3-204ENST00000540699 CCDC88AQ3V6T2 1871 aa13.34□□□□□ -0.27
ATL3-204ENST00000540699 HOXA10P31260 410 aaPredicted RBP13.34□□□□□ -0.27
ATL3-204ENST00000540699 DALRD3Q5D0E6 543 aaKnown RBP13.34□□□□□ -0.27
ATL3-204ENST00000540699 C3orf67Q6ZVT6 689 aa13.34□□□□□ -0.27
ATL3-204ENST00000540699 SRCIN1Q9C0H9 1055 aa13.34□□□□□ -0.27
ATL3-204ENST00000540699 DDX19BQ9UMR2 479 aa13.34□□□□□ -0.27
ATL3-204ENST00000540699 IRS4O14654 1257 aaPredicted RBP13.33□□□□□ -0.28
ATL3-204ENST00000540699 HCLS1P14317 486 aaPredicted RBP13.33□□□□□ -0.28
ATL3-204ENST00000540699 HSP90B1P14625 803 aaKnown RBP13.33□□□□□ -0.28
ATL3-204ENST00000540699 NPR1P16066 1061 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 SF3B3Q15393 1217 aaKnown RBP13.33□□□□□ -0.28
ATL3-204ENST00000540699 C9orf131Q5VYM1 1079 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 MASTLQ96GX5 879 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 NLRP3Q96P20 1036 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 PLA2G12BQ9BX93 195 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 FER1L6Q2WGJ9 1857 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 UTYO14607 1347 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 KDM2BQ8NHM5 1336 aa13.33□□□□□ -0.28
ATL3-204ENST00000540699 CCT4P50991 539 aaKnown RBP13.32□□□□□ -0.28
ATL3-204ENST00000540699 INTS3Q68E01 1043 aaKnown RBP13.32□□□□□ -0.28
ATL3-204ENST00000540699 SLC4A10Q6U841 1118 aa13.32□□□□□ -0.28
ATL3-204ENST00000540699 ITPRIPQ8IWB1 547 aa13.32□□□□□ -0.28
ATL3-204ENST00000540699 NMRK2Q9NPI5 230 aa13.32□□□□□ -0.28
ATL3-204ENST00000540699 TIAM2Q8IVF5 1701 aa13.32□□□□□ -0.28
ATL3-204ENST00000540699 WDR90Q96KV7 1748 aa13.32□□□□□ -0.28
ATL3-204ENST00000540699 LRRC37AA6NMS7 1700 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 GRM8O00222 908 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 PDE8AO60658 829 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 UBE3BQ7Z3V4 1068 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 TTLL6Q8N841 843 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 CNKSR1Q969H4 720 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 CRAMP1Q96RY5 1269 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 RTL9Q8NET4 1388 aa13.31□□□□□ -0.28
ATL3-204ENST00000540699 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
ATL3-204ENST00000540699 JARID2Q92833 1246 aaPredicted RBP13.3□□□□□ -0.28
ATL3-204ENST00000540699 ZNF622Q969S3 477 aaKnown RBP eCLIP13.3□□□□□ -0.28
ATL3-204ENST00000540699 ZBTB40Q9NUA8 1239 aa13.3□□□□□ -0.28
ATL3-204ENST00000540699 RNF181Q9P0P0 153 aa13.3□□□□□ -0.28
ATL3-204ENST00000540699 COL4A1P02462 1669 aa13.3□□□□□ -0.28
ATL3-204ENST00000540699 PCNTO95613 3336 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 ZBTB7BO15156 539 aaPredicted RBP13.29□□□□□ -0.28
ATL3-204ENST00000540699 ALDH1B1P30837 517 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 RBM46Q8TBY0 533 aaKnown RBP13.29□□□□□ -0.28
ATL3-204ENST00000540699 C7orf43Q8WVR3 580 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 RPGRQ92834 1020 aaKnown RBP13.29□□□□□ -0.28
ATL3-204ENST00000540699 USP44Q9H0E7 712 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 PCDHB15Q9Y5E8 787 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 SPEF2Q9C093 1822 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 SNED1Q8TER0 1413 aa13.29□□□□□ -0.28
ATL3-204ENST00000540699 DICER1Q9UPY3 1922 aaKnown RBP13.29□□□□□ -0.28
ATL3-204ENST00000540699 CAPN15O75808 1086 aa13.28□□□□□ -0.28
ATL3-204ENST00000540699 CSF1RP07333 972 aa13.28□□□□□ -0.28
ATL3-204ENST00000540699 NBPF7P0C2Y1 421 aaPredicted RBP13.28□□□□□ -0.28
ATL3-204ENST00000540699 CTSWP56202 376 aa13.28□□□□□ -0.28
ATL3-204ENST00000540699 PRPF40BQ6NWY9 871 aaKnown RBP13.28□□□□□ -0.28
ATL3-204ENST00000540699 TTLL11Q8NHH1 800 aa13.28□□□□□ -0.28
ATL3-204ENST00000540699 RBM17Q96I25 401 aaKnown RBP13.28□□□□□ -0.28
ATL3-204ENST00000540699 C9orf78Q9NZ63 289 aaPredicted RBP13.28□□□□□ -0.28
ATL3-204ENST00000540699 FOXO4P98177 505 aa13.27□□□□□ -0.29
ATL3-204ENST00000540699 RASSF7Q02833 373 aa13.27□□□□□ -0.29
ATL3-204ENST00000540699 FSTL1Q12841 308 aa13.27□□□□□ -0.29
ATL3-204ENST00000540699 CCDC152Q4G0S7 254 aa13.27□□□□□ -0.29
ATL3-204ENST00000540699 C16orf71Q8IYS4 520 aaPredicted RBP13.27□□□□□ -0.29
ATL3-204ENST00000540699 KAZALD1Q96I82 304 aa13.27□□□□□ -0.29
ATL3-204ENST00000540699 CHMP4BQ9H444 224 aaKnown RBP13.27□□□□□ -0.29
ATL3-204ENST00000540699 LTBP1Q14766 1721 aa13.27□□□□□ -0.29
ATL3-204ENST00000540699 A0A1B0GUL6 1792 aa13.26□□□□□ -0.29
ATL3-204ENST00000540699 GRAPQ13588 217 aa13.26□□□□□ -0.29
ATL3-204ENST00000540699 EPHA10Q5JZY3 1008 aa13.26□□□□□ -0.29
ATL3-204ENST00000540699 DDX46Q7L014 1031 aaKnown RBP13.26□□□□□ -0.29
ATL3-204ENST00000540699 CENPQQ7L2Z9 268 aaPredicted RBP13.26□□□□□ -0.29
ATL3-204ENST00000540699 JMYQ8N9B5 988 aa13.26□□□□□ -0.29
ATL3-204ENST00000540699 GRAPLQ8TC17 118 aaPredicted RBP13.26□□□□□ -0.29
ATL3-204ENST00000540699 KLRG1Q96E93 195 aa13.26□□□□□ -0.29
ATL3-204ENST00000540699 ZC3H4Q9UPT8 1303 aaKnown RBP13.25□□□□□ -0.29
ATL3-204ENST00000540699 BBOX1O75936 387 aa13.25□□□□□ -0.29
ATL3-204ENST00000540699 SLC34A2O95436 690 aa13.25□□□□□ -0.29
ATL3-204ENST00000540699 IGHDP01880 384 aa13.25□□□□□ -0.29
ATL3-204ENST00000540699 RABL6Q3YEC7 729 aaPredicted RBP13.25□□□□□ -0.29
ATL3-204ENST00000540699 TMC4Q7Z404 712 aa13.25□□□□□ -0.29
ATL3-204ENST00000540699 SUCLG2Q96I99 432 aa13.25□□□□□ -0.29
ATL3-204ENST00000540699 PRELPP51888 382 aa13.24□□□□□ -0.29
ATL3-204ENST00000540699 SOGA3Q5TF21 947 aa13.24□□□□□ -0.29
ATL3-204ENST00000540699 CC2D2BQ6DHV5 1058 aa13.24□□□□□ -0.29
ATL3-204ENST00000540699 GREM2Q9H772 168 aa13.24□□□□□ -0.29
ATL3-204ENST00000540699 LTBP3Q9NS15 1303 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 PPEF1O14829 653 aaPredicted RBP13.23□□□□□ -0.29
ATL3-204ENST00000540699 C21orf2O43822 256 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms