RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PLEKHG2Q9H7P9 1386 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 RGPD2P0DJD1 1756 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 GPS2Q13227 327 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 NCAPD2Q15021 1401 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 FBXO18Q8NFZ0 1043 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 DEF6Q9H4E7 631 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 NOB1Q9ULX3 412 aaKnown RBP11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 PLEKHO1Q53GL0 409 aaPredicted RBP11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 CFAP44Q96MT7 982 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 C8orf37Q96NL8 207 aa11.18□□□□□ -0.62
CTNNA1-243ENST00000540387 LMO7Q8WWI1 1683 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 ABCC6O95255 1503 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 NPM3O75607 178 aaKnown RBP11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 E2F4Q16254 413 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 NOM1Q5C9Z4 860 aaKnown RBP11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 DNAJC21Q5F1R6 531 aaKnown RBP11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 TMEM87AQ8NBN3 555 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 GOLGA5Q8TBA6 731 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 CT47B1P0C2W7 299 aaPredicted RBP11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 TATP17735 454 aaPredicted RBP11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 CCDC91Q7Z6B0 441 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 DRC7Q8IY82 874 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 NGLY1Q96IV0 654 aa11.17□□□□□ -0.62
CTNNA1-243ENST00000540387 MAGEA9P43362 315 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 GSCP56915 257 aaPredicted RBP11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 ERCC6LQ2NKX8 1250 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 AMOTQ4VCS5 1084 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 SUFUQ9UMX1 484 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 SPATA31A6Q5VVP1 1343 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 CCDC171Q6TFL3 1326 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 USP27XA6NNY8 438 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 GNAT3A8MTJ3 354 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 KIF1CO43896 1103 aaKnown RBP11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 CUL4AQ13619 759 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 PTPN14Q15678 1187 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 ZNF530Q6P9A1 599 aaPredicted RBP11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 NYAP1Q6ZVC0 841 aa11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 CACTINQ8WUQ7 758 aaKnown RBP11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 TSR2Q969E8 191 aaKnown RBP11.16□□□□□ -0.62
CTNNA1-243ENST00000540387 ZRANB2O95218 330 aaKnown RBP eCLIP11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 INTS3Q68E01 1043 aaKnown RBP11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 IL17REQ8NFR9 667 aa11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 ZCCHC17Q9NP64 241 aaKnown RBP11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 UBE2HP62256 183 aa11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 EXOSC9Q06265 439 aaKnown RBP11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 CNPY2Q9Y2B0 182 aa11.15□□□□□ -0.62
CTNNA1-243ENST00000540387 MEGF6O75095 1541 aa11.15□□□□□ -0.63
CTNNA1-243ENST00000540387 TDO2P48775 406 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 NEK4P51957 841 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 HSP90AB3PQ58FF7 597 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 UBXN6Q9BZV1 441 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 LGR6Q9HBX8 967 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 MED4Q9NPJ6 270 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 CRB1P82279 1406 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 IL2RBP14784 551 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 SWT1Q5T5J6 900 aaKnown RBP11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 MPRIPQ6WCQ1 1025 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 REXO1L1PQ8IX06 675 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 IQUBQ8NA54 791 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 IL16Q14005 1332 aa11.14□□□□□ -0.63
CTNNA1-243ENST00000540387 AKAP4Q5JQC9 854 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 PLEKHM2Q8IWE5 1019 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 FAM200AQ8TCP9 573 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 INTS4Q96HW7 963 aaKnown RBP11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 WDR33Q9C0J8 1336 aaKnown RBP11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 COL14A1Q05707 1796 aaKnown RBP11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 LRP6O75581 1613 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 CCDC192P0DO97 292 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 OAS2P29728 719 aaKnown RBP11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 C1orf141Q5JVX7 400 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 TTC22Q5TAA0 569 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 SUGP1Q8IWZ8 645 aaKnown RBP11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 MNS1Q8NEH6 495 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 SRCIN1Q9C0H9 1055 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.13□□□□□ -0.633e-8■■□□□ 11.7
CTNNA1-243ENST00000540387 MIS18AQ9NYP9 233 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 SPG7Q9UQ90 795 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 MAP3K5Q99683 1374 aa11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 RPAP1Q9BWH6 1393 aaPredicted RBP11.13□□□□□ -0.63
CTNNA1-243ENST00000540387 CCDC189A1A4V9 331 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 CYP27B1O15528 508 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 ZNF853P0CG23 659 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 MEX3CQ5U5Q3 659 aaKnown RBP11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 MCTP2Q6DN12 878 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 TMCO3Q6UWJ1 677 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 LUZP1Q86V48 1076 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 UNC5CLQ8IV45 518 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 FNBP4Q8N3X1 1017 aaPredicted RBP11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 LRRN4CLQ8ND94 238 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 AK7Q96M32 723 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 C1orf115Q9H7X2 142 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 CCDC9Q9Y3X0 531 aaKnown RBP11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 FAM208AQ9UK61 1670 aaKnown RBP11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 MCM2P49736 904 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 ZNF75DP51815 510 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 ARHGAP29Q52LW3 1261 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 PLA2G4DQ86XP0 818 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 FAM212AQ96EL1 285 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 SLIT2O94813 1529 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 GOLIM4O00461 696 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms