RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 UNC5CLQ8IV45 518 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 NBPF15Q8N660 670 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 PIGBQ92521 554 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 UBAP1LF5GYI3 381 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 AKAP17AQ02040 695 aaKnown RBP11.82□□□□□ -0.52
TRAF1-202ENST00000540010 KINO60870 393 aaKnown RBP11.82□□□□□ -0.52
TRAF1-202ENST00000540010 CCDC192P0DO97 292 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 GTF2E1P29083 439 aaPredicted RBP11.82□□□□□ -0.52
TRAF1-202ENST00000540010 MNS1Q8NEH6 495 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 NOC3LQ8WTT2 800 aaKnown RBP11.82□□□□□ -0.52
TRAF1-202ENST00000540010 JAKMIP1Q96N16 626 aaKnown RBP11.82□□□□□ -0.52
TRAF1-202ENST00000540010 COL18A1P39060 1754 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 ACSBG1Q96GR2 724 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 TTC41PQ6P2S7 1318 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 XIRP1Q702N8 1843 aaKnown RBP11.81□□□□□ -0.52
TRAF1-202ENST00000540010 NFXL1Q6ZNB6 911 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 FILIP1Q7Z7B0 1213 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 CCDC85AQ96PX6 553 aaPredicted RBP11.81□□□□□ -0.52
TRAF1-202ENST00000540010 TNMDQ9H2S6 317 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 BOLA2Q9H3K6 86 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 A0A0U1RQG5 324 aaPredicted RBP11.81□□□□□ -0.52
TRAF1-202ENST00000540010 LETM1O95202 739 aaPredicted RBP11.81□□□□□ -0.52
TRAF1-202ENST00000540010 PRIM1P49642 420 aaKnown RBP11.81□□□□□ -0.52
TRAF1-202ENST00000540010 CAMK4Q16566 473 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 EPHA10Q5JZY3 1008 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 RALYLQ86SE5 291 aaKnown RBP11.81□□□□□ -0.52
TRAF1-202ENST00000540010 STK11IPQ8N1F8 1099 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 KRT85P78386 507 aa11.81□□□□□ -0.52
TRAF1-202ENST00000540010 PDILTQ8N807 584 aa11.8□□□□□ -0.52
TRAF1-202ENST00000540010 PRDM10Q9NQV6 1147 aa11.8□□□□□ -0.52
TRAF1-202ENST00000540010 USP25Q9UHP3 1055 aa11.8□□□□□ -0.52
TRAF1-202ENST00000540010 SMC2O95347 1197 aa11.8□□□□□ -0.52
TRAF1-202ENST00000540010 GPTP24298 496 aa11.8□□□□□ -0.52
TRAF1-202ENST00000540010 CHMP4CQ96CF2 233 aa11.8□□□□□ -0.52
TRAF1-202ENST00000540010 NGLY1Q96IV0 654 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 SALL3Q9BXA9 1300 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 TSR1Q2NL82 804 aaKnown RBP11.79□□□□□ -0.52
TRAF1-202ENST00000540010 CCDC83Q8IWF9 413 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 KAZALD1Q96I82 304 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 CASTP20810 708 aaKnown RBP11.79□□□□□ -0.52
TRAF1-202ENST00000540010 CCDC57Q2TAC2 916 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 CCDC191Q8NCU4 936 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 PI4K2BQ8TCG2 481 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 EAF2Q96CJ1 260 aaPredicted RBP11.79□□□□□ -0.52
TRAF1-202ENST00000540010 ATG3Q9NT62 314 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 UTYO14607 1347 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 KIF2CQ99661 725 aa11.79□□□□□ -0.52
TRAF1-202ENST00000540010 SASH1O94885 1247 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 CD2BP2O95400 341 aaKnown RBP11.78□□□□□ -0.52
TRAF1-202ENST00000540010 TFCP2Q12800 502 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 LRRFIP1Q32MZ4 808 aaKnown RBP11.78□□□□□ -0.52
TRAF1-202ENST00000540010 TTLL5Q6EMB2 1281 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 EVI5LQ96CN4 794 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 DDX11Q96FC9 970 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 C8orf37Q96NL8 207 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 CDCA7Q9BWT1 371 aaPredicted RBP11.78□□□□□ -0.52
TRAF1-202ENST00000540010 SCN11AQ9UI33 1791 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 TPM1P09493 284 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 ME1P48163 572 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 BLOC1S2Q6QNY1 142 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 FAM177BA6PVY3 158 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 PDRG1Q9NUG6 133 aa11.78□□□□□ -0.52
TRAF1-202ENST00000540010 FAM177A1Q8N128 213 aaPredicted RBP11.77□□□□□ -0.52
TRAF1-202ENST00000540010 HIP1O00291 1037 aa11.77□□□□□ -0.53
TRAF1-202ENST00000540010 NAT10Q9H0A0 1025 aaKnown RBP11.77□□□□□ -0.53
TRAF1-202ENST00000540010 SPATA32Q96LK8 384 aa11.77□□□□□ -0.53
TRAF1-202ENST00000540010 ANTXR1Q9H6X2 564 aa11.77□□□□□ -0.53
TRAF1-202ENST00000540010 CLCN1P35523 988 aa11.77□□□□□ -0.53
TRAF1-202ENST00000540010 TCIRG1Q13488 830 aa11.77□□□□□ -0.53
TRAF1-202ENST00000540010 CCDC112Q8NEF3 446 aa11.77□□□□□ -0.53
TRAF1-202ENST00000540010 PARP4Q9UKK3 1724 aaKnown RBP11.76□□□□□ -0.53
TRAF1-202ENST00000540010 STK38Q15208 465 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 KLHL40Q2TBA0 621 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 FAM89AQ96GI7 184 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 NUP62CLQ9H1M0 184 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 COPRSQ9NQ92 184 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 TLR7Q9NYK1 1049 aaKnown RBP11.76□□□□□ -0.53
TRAF1-202ENST00000540010 TBC1D2BQ9UPU7 963 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 MRC1P22897 1456 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 LRP10Q7Z4F1 713 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 PCMTD1Q96MG8 357 aaPredicted RBP11.76□□□□□ -0.53
TRAF1-202ENST00000540010 MARCH6O60337 910 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 CBX1P83916 185 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 GPS2Q13227 327 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 HSP90AB3PQ58FF7 597 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 TEX35Q5T0J7 233 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 PRPF40BQ6NWY9 871 aaKnown RBP11.76□□□□□ -0.53
TRAF1-202ENST00000540010 CEP126Q9P2H0 1117 aa11.76□□□□□ -0.53
TRAF1-202ENST00000540010 ATP6V1AP38606 617 aa11.75□□□□□ -0.53
TRAF1-202ENST00000540010 PTPN12Q05209 780 aaKnown RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 TRMT112Q9UI30 125 aaKnown RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 SGSM2O43147 1006 aa11.75□□□□□ -0.53
TRAF1-202ENST00000540010 TNNI3KQ59H18 835 aa11.75□□□□□ -0.53
TRAF1-202ENST00000540010 ZNF594Q96JF6 807 aaPredicted RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 ZNF830Q96NB3 372 aaPredicted RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 ARGLU1Q9NWB6 273 aaPredicted RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 FPGT-TNNI3KV9GXZ4 949 aa11.75□□□□□ -0.53
TRAF1-202ENST00000540010 H7C1W4 665 aa11.75□□□□□ -0.53
TRAF1-202ENST00000540010 MEX3CQ5U5Q3 659 aaKnown RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 CKAP2LQ8IYA6 745 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms