RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 TBC1D9Q6ZT07 1266 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 SREK1Q8WXA9 508 aaKnown RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 TRIM47Q96LD4 638 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 TRMT112Q9UI30 125 aaKnown RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC61Q9Y6R9 512 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 ZNF830Q96NB3 372 aaPredicted RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 NEK1Q96PY6 1258 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 PLVAPQ9BX97 442 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 KAT14Q9H8E8 782 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 ECHDC1Q9NTX5 307 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 PUF60Q9UHX1 559 aaKnown RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 CAPN2P17655 700 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 RPAINQ86UA6 219 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 TBC1D5Q92609 795 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 CDK13Q14004 1512 aaKnown RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 KLHL40Q2TBA0 621 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 CTAGE1Q96RT6 745 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 IQGAP2Q13576 1575 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 LRPPRCP42704 1394 aaKnown RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 RSRC1Q96IZ7 334 aaKnown RBP11.35□□□□□ -0.59
COL4A6-208ENST00000538570 OGFRQ9NZT2 677 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 NAIPQ13075 1403 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 UBASH3AP57075 661 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 NCOA7Q8NI08 942 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 AKR1B10O60218 316 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 WDHD1O75717 1129 aaPredicted RBP11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CYLC1P35663 651 aaPredicted RBP11.35□□□□□ -0.59
COL4A6-208ENST00000538570 LRSAM1Q6UWE0 723 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 PIK3R5Q8WYR1 880 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 SLC26A6Q9BXS9 759 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 ARFGAP3Q9NP61 516 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 A0A1B0GUA9 196 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 PDE4BQ07343 736 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 MSL1Q68DK7 614 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 DDX23Q9BUQ8 820 aaKnown RBP11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CFAP57Q96MR6 1250 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CTAGE15A4D2H0 777 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CTAGE8P0CG41 777 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 BMP2KLQ5H9B9 411 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 MFSD6Q6ZSS7 791 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CTAGE6Q86UF2 777 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CTAGE4Q8IX94 777 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 SELENOOQ9BVL4 669 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 DBF4Q9UBU7 674 aaPredicted RBP11.35□□□□□ -0.59
COL4A6-208ENST00000538570 RASAL2Q9UJF2 1139 aa11.35□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC160A6NGH7 325 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 SYKP43405 635 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 PIP4K2BP78356 416 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC174Q6PII3 467 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 MAGI1Q96QZ7 1491 aaPredicted RBP11.34□□□□□ -0.59
COL4A6-208ENST00000538570 MICU3Q86XE3 530 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 RPGRQ92834 1020 aaKnown RBP11.34□□□□□ -0.59
COL4A6-208ENST00000538570 TSPY2A6NKD2 308 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 TBCAO75347 108 aaKnown RBP11.34□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC6Q16204 474 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 WDR78Q5VTH9 848 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 VAT1LQ9HCJ6 419 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 CEP83Q9Y592 693 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC141Q6ZP82 1450 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 POGZQ7Z3K3 1410 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 SKAP1Q86WV1 359 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 SERPINA10Q9UK55 444 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 ZKSCAN5Q9Y2L8 839 aa11.34□□□□□ -0.59
COL4A6-208ENST00000538570 KIF4AO95239 1232 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 RRAGBQ5VZM2 374 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 GIMAP6Q6P9H5 292 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 IQCGQ9H095 443 aaKnown RBP11.33□□□□□ -0.6
COL4A6-208ENST00000538570 OPA1O60313 960 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 ZSCAN22P10073 491 aaPredicted RBP11.33□□□□□ -0.6
COL4A6-208ENST00000538570 MXRA7P84157 204 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 SSX2IPQ9Y2D8 614 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 HCLS1P14317 486 aaPredicted RBP11.33□□□□□ -0.6
COL4A6-208ENST00000538570 TTC12Q9H892 705 aaPredicted RBP11.33□□□□□ -0.6
COL4A6-208ENST00000538570 SAMM50Q9Y512 469 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 CLNS1AP54105 237 aaKnown RBP11.33□□□□□ -0.6
COL4A6-208ENST00000538570 TTC22Q5TAA0 569 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 STMN4Q9H169 189 aaPredicted RBP11.33□□□□□ -0.6
COL4A6-208ENST00000538570 MMRN2Q9H8L6 949 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 LDHCP07864 332 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 TRIM27P14373 513 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 MCM6Q14566 821 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 MIPOL1Q8TD10 442 aa11.33□□□□□ -0.6
COL4A6-208ENST00000538570 LRRC45Q96CN5 670 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 BICD1Q96G01 975 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 PUS7Q96PZ0 661 aaKnown RBP11.32□□□□□ -0.6
COL4A6-208ENST00000538570 BICRAQ9NZM4 1560 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 BAG3O95817 575 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 BMP15O95972 392 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 MAP2K2P36507 400 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 PRPHP41219 470 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 FLIIQ13045 1269 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 HAND2P61296 217 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 OTUD6BQ8N6M0 293 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 USHBP1Q8N6Y0 703 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 MAP3K2Q9Y2U5 619 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 ARHGEF11O15085 1522 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 ANO6Q4KMQ2 910 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 KRBA2Q6ZNG9 492 aa11.32□□□□□ -0.6
COL4A6-208ENST00000538570 TMEM87AQ8NBN3 555 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms