RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 JARID2Q92833 1246 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-208ENST00000537004 SH3TC1Q8TE82 1336 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 PI4KAP2A4QPH2 592 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 ALDH1B1P30837 517 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 PI4KAP1Q8N8J0 262 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 MAP3K2Q9Y2U5 619 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 HOXA10P31260 410 aaPredicted RBP14.98□□□□□ -0.01
CLIP1-208ENST00000537004 BACH2Q9BYV9 841 aa14.98□□□□□ -0.01
CLIP1-208ENST00000537004 TAOK3Q9H2K8 898 aa14.98□□□□□ -0.01
CLIP1-208ENST00000537004 NMRK2Q9NPI5 230 aa14.97□□□□□ -0.01
CLIP1-208ENST00000537004 TRIM28Q13263 835 aaKnown RBP14.97□□□□□ -0.01
CLIP1-208ENST00000537004 RWDD1Q9H446 243 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-208ENST00000537004 DDX58O95786 925 aaKnown RBP14.96□□□□□ -0.01
CLIP1-208ENST00000537004 RGS3P49796 1198 aa14.96□□□□□ -0.01
CLIP1-208ENST00000537004 CCDC93Q567U6 631 aa14.96□□□□□ -0.01
CLIP1-208ENST00000537004 KSR2Q6VAB6 950 aa14.96□□□□□ -0.01
CLIP1-208ENST00000537004 RBM17Q96I25 401 aaKnown RBP14.96□□□□□ -0.01
CLIP1-208ENST00000537004 METTL22Q9BUU2 404 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-208ENST00000537004 CHMP4AQ9BY43 222 aa14.96□□□□□ -0.01
CLIP1-208ENST00000537004 ZNF277Q9NRM2 450 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-208ENST00000537004 RIC1Q4ADV7 1423 aa14.96□□□□□ -0.02
CLIP1-208ENST00000537004 CACNA1SQ13698 1873 aa14.96□□□□□ -0.02
CLIP1-208ENST00000537004 IGKV5-2P06315 115 aa14.95□□□□□ -0.02
CLIP1-208ENST00000537004 FLIIQ13045 1269 aa14.95□□□□□ -0.02
CLIP1-208ENST00000537004 ABCC4O15439 1325 aa14.95□□□□□ -0.02
CLIP1-208ENST00000537004 KIF3CO14782 793 aa14.95□□□□□ -0.02
CLIP1-208ENST00000537004 CWF19L2Q2TBE0 894 aaKnown RBP14.95□□□□□ -0.02
CLIP1-208ENST00000537004 CRAMP1Q96RY5 1269 aa14.95□□□□□ -0.02
CLIP1-208ENST00000537004 ZBTB40Q9NUA8 1239 aa14.95□□□□□ -0.02
CLIP1-208ENST00000537004 IRS4O14654 1257 aaPredicted RBP14.94□□□□□ -0.02
CLIP1-208ENST00000537004 C1QTNF8P60827 252 aa14.94□□□□□ -0.02
CLIP1-208ENST00000537004 SOGA3Q5TF21 947 aa14.94□□□□□ -0.02
CLIP1-208ENST00000537004 SBF1O95248 1867 aa14.94□□□□□ -0.02
CLIP1-208ENST00000537004 PPEF1O14829 653 aaPredicted RBP14.93□□□□□ -0.02
CLIP1-208ENST00000537004 FKBP5Q13451 457 aaPredicted RBP14.93□□□□□ -0.02
CLIP1-208ENST00000537004 ZBTB38Q8NAP3 1195 aaPredicted RBP14.93□□□□□ -0.02
CLIP1-208ENST00000537004 LTBP3Q9NS15 1303 aa14.93□□□□□ -0.02
CLIP1-208ENST00000537004 ANKRD36CQ5JPF3 1778 aa14.93□□□□□ -0.02
CLIP1-208ENST00000537004 ARFGEF2Q9Y6D5 1785 aa14.93□□□□□ -0.02
CLIP1-208ENST00000537004 FKBP4Q02790 459 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLIP1-208ENST00000537004 CCDC191Q8NCU4 936 aa14.93□□□□□ -0.02
CLIP1-208ENST00000537004 API5Q9BZZ5 524 aaKnown RBP14.93□□□□□ -0.02
CLIP1-208ENST00000537004 CWC25Q9NXE8 425 aaPredicted RBP14.93□□□□□ -0.02
CLIP1-208ENST00000537004 PCNTO95613 3336 aa14.93□□□□□ -0.02
CLIP1-208ENST00000537004 F6X3S4 739 aa14.92□□□□□ -0.02
CLIP1-208ENST00000537004 DDX46Q7L014 1031 aaKnown RBP14.92□□□□□ -0.02
CLIP1-208ENST00000537004 RTKN2Q8IZC4 609 aa14.92□□□□□ -0.02
CLIP1-208ENST00000537004 CCDC85AQ96PX6 553 aaPredicted RBP14.92□□□□□ -0.02
CLIP1-208ENST00000537004 SNED1Q8TER0 1413 aa14.92□□□□□ -0.02
CLIP1-208ENST00000537004 FER1L6Q2WGJ9 1857 aa14.92□□□□□ -0.02
CLIP1-208ENST00000537004 HDAC1Q13547 482 aaPredicted RBP14.92□□□□□ -0.02
CLIP1-208ENST00000537004 RRAGCQ9HB90 399 aa14.92□□□□□ -0.02
CLIP1-208ENST00000537004 CELF1Q92879 486 aaKnown RBP14.91□□□□□ -0.02
CLIP1-208ENST00000537004 CHMP4BQ9H444 224 aaKnown RBP14.91□□□□□ -0.02
CLIP1-208ENST00000537004 GLTPD2A6NH11 291 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 NEURL1BA8MQ27 555 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 PCCAP05165 728 aaPredicted RBP14.9□□□□□ -0.02
CLIP1-208ENST00000537004 NEXNQ0ZGT2 675 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 ATP6V0A2Q9Y487 856 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 ZBTB7BO15156 539 aaPredicted RBP14.9□□□□□ -0.02
CLIP1-208ENST00000537004 ANP32AP39687 249 aaKnown RBP14.9□□□□□ -0.02
CLIP1-208ENST00000537004 GRAPQ13588 217 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 SF3B3Q15393 1217 aaKnown RBP14.9□□□□□ -0.02
CLIP1-208ENST00000537004 FAM161AQ3B820 660 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 GRAPLQ8TC17 118 aaPredicted RBP14.9□□□□□ -0.02
CLIP1-208ENST00000537004 SEC31BQ9NQW1 1179 aa14.9□□□□□ -0.02
CLIP1-208ENST00000537004 COL4A1P02462 1669 aa14.89□□□□□ -0.03
CLIP1-208ENST00000537004 DDNO94850 711 aaPredicted RBP14.89□□□□□ -0.03
CLIP1-208ENST00000537004 DNAAF4Q8WXU2 420 aa14.89□□□□□ -0.03
CLIP1-208ENST00000537004 ZC3H4Q9UPT8 1303 aaKnown RBP14.89□□□□□ -0.03
CLIP1-208ENST00000537004 BBOX1O75936 387 aa14.88□□□□□ -0.03
CLIP1-208ENST00000537004 IARSP41252 1262 aaKnown RBP14.88□□□□□ -0.03
CLIP1-208ENST00000537004 PSMD1Q99460 953 aa14.88□□□□□ -0.03
CLIP1-208ENST00000537004 PTPRCP08575 1304 aa14.88□□□□□ -0.03
CLIP1-208ENST00000537004 CCDC88AQ3V6T2 1871 aa14.88□□□□□ -0.03
CLIP1-208ENST00000537004 C8orf34Q49A92 452 aa14.88□□□□□ -0.03
CLIP1-208ENST00000537004 UBE3BQ7Z3V4 1068 aa14.88□□□□□ -0.03
CLIP1-208ENST00000537004 TAF1P21675 1872 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 POTECB2RU33 542 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 GCKRQ14397 625 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 CC2D2BQ6DHV5 1058 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 DDX60Q8IY21 1712 aaKnown RBP14.87□□□□□ -0.03
CLIP1-208ENST00000537004 ZNF541Q9H0D2 1346 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 LAMB2P55268 1798 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 PDE8AO60658 829 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 DPY19L2Q6NUT2 758 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 SP8Q8IXZ3 490 aa14.87□□□□□ -0.03
CLIP1-208ENST00000537004 COL4A5P29400 1685 aa14.86□□□□□ -0.03
CLIP1-208ENST00000537004 INTS3Q68E01 1043 aaKnown RBP14.86□□□□□ -0.03
CLIP1-208ENST00000537004 H7C1W4 665 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 AOC3Q16853 763 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 BEND3Q5T5X7 828 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 DPP8Q6V1X1 898 aaPredicted RBP14.85□□□□□ -0.03
CLIP1-208ENST00000537004 SMC5Q8IY18 1101 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 LINS1Q8NG48 757 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 TMX4Q9H1E5 349 aaPredicted RBP14.85□□□□□ -0.03
CLIP1-208ENST00000537004 TIAM2Q8IVF5 1701 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 TOMM70O94826 608 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 RPS8P62241 208 aaKnown RBP14.85□□□□□ -0.03
CLIP1-208ENST00000537004 SLC4A10Q6U841 1118 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms