RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 SIPA1L3O60292 1781 aaPredicted RBP7.65□□□□□ -1.19
SYNE1-233ENST00000535896 ADAMTS7Q9UKP4 1686 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 ATRNO75882 1429 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 ZBTB7CA1YPR0 619 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 HOXC9P31274 260 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 AMPHP49418 695 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 FOSBP53539 338 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 FLIIQ13045 1269 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 DCTN1Q14203 1278 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 VPS72Q15906 364 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 HSP90AB4PQ58FF6 505 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 AEBP1Q8IUX7 1158 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 HDAC5Q9UQL6 1122 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 ZDHHC9Q9Y397 364 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 TCHHQ07283 1943 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 WDR17Q8IZU2 1322 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 RAD50Q92878 1312 aa7.64□□□□□ -1.19
SYNE1-233ENST00000535896 NCLP19338 710 aaKnown RBP7.63□□□□□ -1.19
SYNE1-233ENST00000535896 CHMLP26374 656 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 HSPA4P34932 840 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 NEK4P51957 841 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 EVA1CP58658 441 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 NKX1-1Q15270 411 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-233ENST00000535896 MCM10Q7L590 875 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 GPT2Q8TD30 523 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 OTUD7AQ8TE49 926 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-233ENST00000535896 SSH3Q8TE77 659 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 ZBED2Q9BTP6 218 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 CEMIPQ8WUJ3 1361 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 PLEKHG2Q9H7P9 1386 aa7.63□□□□□ -1.19
SYNE1-233ENST00000535896 GNAT3A8MTJ3 354 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 PRPF40AO75400 957 aaKnown RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 FBLN1P23142 703 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 PRIM1P49642 420 aaKnown RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 RBM6P78332 1123 aaKnown RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 MTHFSDQ2M296 383 aaKnown RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 KIAA1211Q6ZU35 1233 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 C16orf71Q8IYS4 520 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 ZGPATQ8N5A5 531 aaKnown RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 RBSNQ9H1K0 784 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 TSPY26PQ9H489 355 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 QTRT2Q9H974 415 aaKnown RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 STRN4Q9NRL3 753 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 RGS17Q9UGC6 210 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 SPATA31A5Q5VU36 1347 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 TTC41PQ6P2S7 1318 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 SPATA31A7Q8IWB4 1347 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 RGPD5Q99666 1765 aa7.62□□□□□ -1.19
SYNE1-233ENST00000535896 RPAP1Q9BWH6 1393 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-233ENST00000535896 DYNC1I1O14576 645 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 SMARCA5O60264 1052 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-233ENST00000535896 CSB-PGBD3P0DP91 1061 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 HSP90AB2PQ58FF8 381 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 ANKRD24Q8TF21 1146 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 KIF1BPQ96EK5 621 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 GJD4Q96KN9 370 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-233ENST00000535896 CARD10Q9BWT7 1032 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 NBPF3Q9H094 633 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 TMEM63CQ9P1W3 806 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 THRAP3Q9Y2W1 955 aaKnown RBP7.61□□□□□ -1.19
SYNE1-233ENST00000535896 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-233ENST00000535896 SPATA31A1Q5TZJ5 1347 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 CCDC171Q6TFL3 1326 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 MRC1P22897 1456 aa7.61□□□□□ -1.19
SYNE1-233ENST00000535896 GLI3P10071 1580 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 TPM3P06753 285 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 UBTFL1P0CB47 393 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-233ENST00000535896 RXRBP28702 533 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 FKBP5Q13451 457 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-233ENST00000535896 MTX1Q13505 466 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 PKP1Q13835 747 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 PPP1R15BQ5SWA1 713 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 CCDC183Q5T5S1 534 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 LARP1Q6PKG0 1096 aaKnown RBP7.6□□□□□ -1.19
SYNE1-233ENST00000535896 TOM1L2Q6ZVM7 507 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 CNTROBQ8N137 903 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 CDCA7Q9BWT1 371 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-233ENST00000535896 TM6SF1Q9BZW5 370 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 CRISPLD2Q9H0B8 497 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 ANO2Q9NQ90 1003 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 SH2B1Q9NRF2 756 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-233ENST00000535896 CCDC9Q9Y3X0 531 aaKnown RBP7.6□□□□□ -1.19
SYNE1-233ENST00000535896 MYH15Q9Y2K3 1946 aa7.6□□□□□ -1.19
SYNE1-233ENST00000535896 SYCE3A1L190 88 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 SGSM2O43147 1006 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 GTPBP6O43824 516 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-233ENST00000535896 UBE2HP62256 183 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 HMGN5P82970 282 aaKnown RBP7.59□□□□□ -1.19
SYNE1-233ENST00000535896 KIAA2012Q0VF49 1180 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 TAF7Q15545 349 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-233ENST00000535896 KRT24Q2M2I5 525 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 POTEAQ6S8J7 498 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 SLC4A10Q6U841 1118 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 SASS6Q6UVJ0 657 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 BARGINQ6ZT62 677 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 ERC1Q8IUD2 1116 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 RUFY2Q8WXA3 655 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 KCNB2Q92953 911 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 PRIMPOLQ96LW4 560 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 ZSCAN31Q96LW9 406 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms