RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 LRP5O75197 1615 aa19.76■□□□□ 0.75
TRIM3-213ENST00000533309 NBPF5PQ86XG9 351 aaPredicted RBP19.76■□□□□ 0.75
TRIM3-213ENST00000533309 RHPN1Q8TCX5 695 aa19.76■□□□□ 0.75
TRIM3-213ENST00000533309 CCDC85AQ96PX6 553 aaPredicted RBP19.76■□□□□ 0.75
TRIM3-213ENST00000533309 NYXQ9GZU5 481 aa19.76■□□□□ 0.75
TRIM3-213ENST00000533309 SIL1Q9H173 461 aa19.76■□□□□ 0.75
TRIM3-213ENST00000533309 GREM2Q9H772 168 aa19.76■□□□□ 0.75
TRIM3-213ENST00000533309 NRXN2Q9P2S2 1712 aa19.75■□□□□ 0.75
TRIM3-213ENST00000533309 TM4SF1P30408 202 aa19.75■□□□□ 0.75
TRIM3-213ENST00000533309 KIF1BPQ96EK5 621 aa19.75■□□□□ 0.75
TRIM3-213ENST00000533309 STK32BQ9NY57 414 aa19.75■□□□□ 0.75
TRIM3-213ENST00000533309 SPEF2Q9C093 1822 aa19.74■□□□□ 0.75
TRIM3-213ENST00000533309 SLC10A5Q5PT55 438 aa19.74■□□□□ 0.75
TRIM3-213ENST00000533309 C16orf71Q8IYS4 520 aaPredicted RBP19.74■□□□□ 0.75
TRIM3-213ENST00000533309 OTUD7AQ8TE49 926 aaPredicted RBP19.74■□□□□ 0.75
TRIM3-213ENST00000533309 TAF1P21675 1872 aa19.74■□□□□ 0.75
TRIM3-213ENST00000533309 SASH1O94885 1247 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 HSP90B1P14625 803 aaKnown RBP19.73■□□□□ 0.75
TRIM3-213ENST00000533309 DDR1Q08345 913 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 OS9Q13438 667 aaPredicted RBP19.73■□□□□ 0.75
TRIM3-213ENST00000533309 C3orf67Q6ZVT6 689 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 ZNF594Q96JF6 807 aaPredicted RBP19.73■□□□□ 0.75
TRIM3-213ENST00000533309 IL1RAPL2Q9NP60 686 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 COL4A1P02462 1669 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 RTL9Q8NET4 1388 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 G3BP1Q13283 466 aaKnown RBP eCLIP19.73■□□□□ 0.75
TRIM3-213ENST00000533309 CCDC57Q2TAC2 916 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 TPTE2Q6XPS3 522 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 ERC1Q8IUD2 1116 aa19.73■□□□□ 0.75
TRIM3-213ENST00000533309 ZBTB47Q9UFB7 747 aaPredicted RBP19.73■□□□□ 0.75
TRIM3-213ENST00000533309 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.73■□□□□ 0.75
TRIM3-213ENST00000533309 SALL3Q9BXA9 1300 aa19.72■□□□□ 0.75
TRIM3-213ENST00000533309 RIC1Q4ADV7 1423 aa19.72■□□□□ 0.75
TRIM3-213ENST00000533309 MSH5O43196 834 aa19.72■□□□□ 0.75
TRIM3-213ENST00000533309 ITGA6P23229 1130 aa19.72■□□□□ 0.75
TRIM3-213ENST00000533309 IFIT5Q13325 482 aaKnown RBP19.72■□□□□ 0.75
TRIM3-213ENST00000533309 PLEKHM2Q8IWE5 1019 aa19.72■□□□□ 0.75
TRIM3-213ENST00000533309 POLRMTO00411 1230 aaKnown RBP19.71■□□□□ 0.75
TRIM3-213ENST00000533309 ATG9AQ7Z3C6 839 aa19.71■□□□□ 0.75
TRIM3-213ENST00000533309 GTF2E1P29083 439 aaPredicted RBP19.7■□□□□ 0.74
TRIM3-213ENST00000533309 PRR5LQ6MZQ0 368 aa19.7■□□□□ 0.74
TRIM3-213ENST00000533309 NLGN1Q8N2Q7 840 aa19.7■□□□□ 0.74
TRIM3-213ENST00000533309 CCDC24Q8N4L8 307 aa19.7■□□□□ 0.74
TRIM3-213ENST00000533309 CNBD1Q8NA66 436 aa19.7■□□□□ 0.74
TRIM3-213ENST00000533309 BCL11AQ9H165 835 aa19.7■□□□□ 0.74
TRIM3-213ENST00000533309 ANKRD31Q8N7Z5 1873 aa19.7■□□□□ 0.74
TRIM3-213ENST00000533309 EYA2O00167 538 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 CIAO1O76071 339 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 SERPINB2P05120 415 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 SF3B3Q15393 1217 aaKnown RBP19.69■□□□□ 0.74
TRIM3-213ENST00000533309 CCDC152Q4G0S7 254 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 PUS3Q9BZE2 481 aaKnown RBP19.69■□□□□ 0.74
TRIM3-213ENST00000533309 ANKRD18BA2A2Z9 1011 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 LRRC24Q50LG9 513 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 UPF1Q92900 1129 aaKnown RBP eCLIP19.69■□□□□ 0.74
TRIM3-213ENST00000533309 FBXO3Q9UK99 471 aa19.69■□□□□ 0.74
TRIM3-213ENST00000533309 A0A1B0GUL6 1792 aa19.68■□□□□ 0.74
TRIM3-213ENST00000533309 SEC31BQ9NQW1 1179 aa19.68■□□□□ 0.74
TRIM3-213ENST00000533309 IL15P40933 162 aaPredicted RBP19.67■□□□□ 0.74
TRIM3-213ENST00000533309 TFCP2Q12800 502 aa19.66■□□□□ 0.74
TRIM3-213ENST00000533309 TAF7LQ5H9L4 462 aa19.66■□□□□ 0.74
TRIM3-213ENST00000533309 CLASRPQ8N2M8 674 aaKnown RBP19.66■□□□□ 0.74
TRIM3-213ENST00000533309 PDGFDQ9GZP0 370 aaPredicted RBP19.66■□□□□ 0.74
TRIM3-213ENST00000533309 PDE1AP54750 535 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 MSL1Q68DK7 614 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 EAF2Q96CJ1 260 aaPredicted RBP19.65■□□□□ 0.74
TRIM3-213ENST00000533309 NLRP3Q96P20 1036 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 OSBPL3Q9H4L5 887 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 NPHP1O15259 732 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 MMP10P09238 476 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 MX1P20591 662 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 STAP2Q9UGK3 403 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 RIPOR2Q9Y4F9 1068 aa19.65■□□□□ 0.74
TRIM3-213ENST00000533309 LDHAL6AQ6ZMR3 332 aa19.64■□□□□ 0.73
TRIM3-213ENST00000533309 ZNF609O15014 1411 aa19.64■□□□□ 0.73
TRIM3-213ENST00000533309 GSPT1P15170 499 aaKnown RBP19.63■□□□□ 0.73
TRIM3-213ENST00000533309 ST5P78524 1137 aa19.63■□□□□ 0.73
TRIM3-213ENST00000533309 TNNI3KQ59H18 835 aa19.63■□□□□ 0.73
TRIM3-213ENST00000533309 TSHZ3Q63HK5 1081 aa19.63■□□□□ 0.73
TRIM3-213ENST00000533309 AACSQ86V21 672 aa19.63■□□□□ 0.73
TRIM3-213ENST00000533309 FPGT-TNNI3KV9GXZ4 949 aa19.63■□□□□ 0.73
TRIM3-213ENST00000533309 BMP2KLQ5H9B9 411 aa19.62■□□□□ 0.73
TRIM3-213ENST00000533309 TTC22Q5TAA0 569 aa19.62■□□□□ 0.73
TRIM3-213ENST00000533309 TLR7Q9NYK1 1049 aaKnown RBP19.62■□□□□ 0.73
TRIM3-213ENST00000533309 GPR108Q9NPR9 543 aa19.62■□□□□ 0.73
TRIM3-213ENST00000533309 AOX1Q06278 1338 aa19.62■□□□□ 0.73
TRIM3-213ENST00000533309 COL11A2P13942 1736 aaPredicted RBP19.61■□□□□ 0.73
TRIM3-213ENST00000533309 C8orf34Q49A92 452 aa19.61■□□□□ 0.73
TRIM3-213ENST00000533309 CRY2Q49AN0 593 aa19.61■□□□□ 0.73
TRIM3-213ENST00000533309 AK9Q5TCS8 1911 aa19.61■□□□□ 0.73
TRIM3-213ENST00000533309 VGLL2Q8N8G2 317 aa19.61■□□□□ 0.73
TRIM3-213ENST00000533309 ARAP2Q8WZ64 1704 aa19.61■□□□□ 0.73
TRIM3-213ENST00000533309 CDC5LQ99459 802 aaKnown RBP19.61■□□□□ 0.73
TRIM3-213ENST00000533309 CNNM1Q9NRU3 951 aa19.61■□□□□ 0.73
TRIM3-213ENST00000533309 IFIT2P09913 472 aaKnown RBP19.6■□□□□ 0.73
TRIM3-213ENST00000533309 PI4K2BQ8TCG2 481 aa19.6■□□□□ 0.73
TRIM3-213ENST00000533309 CELF1Q92879 486 aaKnown RBP19.6■□□□□ 0.73
TRIM3-213ENST00000533309 CCDC8Q9H0W5 538 aaPredicted RBP19.6■□□□□ 0.73
TRIM3-213ENST00000533309 CEP126Q9P2H0 1117 aa19.6■□□□□ 0.73
TRIM3-213ENST00000533309 DBNLQ9UJU6 430 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms