RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 PEAK1Q9H792 1746 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 PCCAP05165 728 aaPredicted RBP13.19□□□□□ -0.3
TRIM3-211ENST00000532542 TRIM29Q14134 588 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 LRP2BPQ9P2M1 347 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 MAP3K15Q6ZN16 1313 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 A0A1B0GUL7 405 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 AKAP17AQ02040 695 aaKnown RBP13.19□□□□□ -0.3
TRIM3-211ENST00000532542 NALCNQ8IZF0 1738 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 PLEKHG2Q9H7P9 1386 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 PDE8AO60658 829 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 TIMM10P62072 90 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 RAB3GAP1Q15042 981 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 CAVIN4Q5BKX8 364 aa13.19□□□□□ -0.3
TRIM3-211ENST00000532542 INTS4Q96HW7 963 aaKnown RBP13.19□□□□□ -0.3
TRIM3-211ENST00000532542 NFAT5O94916 1531 aa13.18□□□□□ -0.3
TRIM3-211ENST00000532542 ZBTB38Q8NAP3 1195 aaPredicted RBP13.18□□□□□ -0.3
TRIM3-211ENST00000532542 FBXO3Q9UK99 471 aa13.18□□□□□ -0.3
TRIM3-211ENST00000532542 HSPA4P34932 840 aa13.18□□□□□ -0.3
TRIM3-211ENST00000532542 FAM98CQ17RN3 349 aaKnown RBP13.18□□□□□ -0.3
TRIM3-211ENST00000532542 GIGYF2Q6Y7W6 1299 aaKnown RBP13.18□□□□□ -0.3
TRIM3-211ENST00000532542 NEK1Q96PY6 1258 aa13.18□□□□□ -0.3
TRIM3-211ENST00000532542 RGS12O14924 1447 aa13.17□□□□□ -0.3
TRIM3-211ENST00000532542 BAG4O95429 457 aaKnown RBP13.17□□□□□ -0.3
TRIM3-211ENST00000532542 ITGA6P23229 1130 aa13.17□□□□□ -0.3
TRIM3-211ENST00000532542 CREB3L3Q68CJ9 461 aa13.17□□□□□ -0.3
TRIM3-211ENST00000532542 PXDNQ92626 1479 aa13.17□□□□□ -0.3
TRIM3-211ENST00000532542 MEGF6O75095 1541 aa13.17□□□□□ -0.3
TRIM3-211ENST00000532542 IL6STP40189 918 aaPredicted RBP13.17□□□□□ -0.3
TRIM3-211ENST00000532542 ZNF594Q96JF6 807 aaPredicted RBP13.17□□□□□ -0.3
TRIM3-211ENST00000532542 UNC5CLQ8IV45 518 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 FIBPO43427 364 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 NKX1-1Q15270 411 aaPredicted RBP13.16□□□□□ -0.3
TRIM3-211ENST00000532542 SLIT3O75094 1523 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 H7C1W4 665 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 RNF113AO15541 343 aaKnown RBP13.16□□□□□ -0.3
TRIM3-211ENST00000532542 MSNP26038 577 aaKnown RBP13.16□□□□□ -0.3
TRIM3-211ENST00000532542 KRT85P78386 507 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 VPS53Q5VIR6 699 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 KBTBD3Q8NAB2 608 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 AK7Q96M32 723 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 RAI14Q9P0K7 980 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 BICD2Q8TD16 824 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 ATG3Q9NT62 314 aa13.16□□□□□ -0.3
TRIM3-211ENST00000532542 ZNF213O14771 459 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 NBPF5PQ86XG9 351 aaPredicted RBP13.15□□□□□ -0.3
TRIM3-211ENST00000532542 PI4K2BQ8TCG2 481 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 FAM227BQ96M60 508 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 SETDB2Q96T68 719 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 RTN4Q9NQC3 1192 aaKnown RBP13.15□□□□□ -0.3
TRIM3-211ENST00000532542 HELLSQ9NRZ9 838 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 ABCF2Q9UG63 623 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 SNX14Q9Y5W7 946 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 TDO2P48775 406 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 PTPN12Q05209 780 aaKnown RBP13.15□□□□□ -0.3
TRIM3-211ENST00000532542 ANKRD18AQ8IVF6 992 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 GPR108Q9NPR9 543 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 LOC102724428A0A0B4J2F2 783 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 SASH1O94885 1247 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 SIK1P57059 783 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 NYXQ9GZU5 481 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 ZBTB1Q9Y2K1 713 aa13.15□□□□□ -0.3
TRIM3-211ENST00000532542 RFC4P35249 363 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 AK2P54819 239 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 PDIA6Q15084 440 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 LARP6Q9BRS8 491 aaKnown RBP13.14□□□□□ -0.31
TRIM3-211ENST00000532542 CIAO1O76071 339 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 LETM1O95202 739 aaPredicted RBP13.14□□□□□ -0.31
TRIM3-211ENST00000532542 CCDC34Q96HJ3 373 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 USP21Q9UK80 565 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 RTCBQ9Y3I0 505 aaKnown RBP13.14□□□□□ -0.31
TRIM3-211ENST00000532542 STX6O43752 255 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 SLC3A2P08195 630 aaKnown RBP13.14□□□□□ -0.31
TRIM3-211ENST00000532542 FOSBP53539 338 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 RUFY3Q7L099 469 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 XAGE2Q96GT9 111 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 NLRP3Q96P20 1036 aa13.14□□□□□ -0.31
TRIM3-211ENST00000532542 KDM6AO15550 1401 aaPredicted RBP13.14□□□□□ -0.31
TRIM3-211ENST00000532542 GOLGA6L6A8MZA4 724 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 NBPF26B4DH59 902 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 CTSWP56202 376 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 RRP12Q5JTH9 1297 aaKnown RBP13.13□□□□□ -0.31
TRIM3-211ENST00000532542 NBPF14Q5TI25 921 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 NBPF10Q6P3W6 841 aaKnown RBP13.13□□□□□ -0.31
TRIM3-211ENST00000532542 ZGPATQ8N5A5 531 aaKnown RBP13.13□□□□□ -0.31
TRIM3-211ENST00000532542 NBPF15Q8N660 670 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 NAPBQ9H115 298 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 SAFBQ15424 915 aaKnown RBP eCLIP13.13□□□□□ -0.31
TRIM3-211ENST00000532542 ERVV-1B6SEH8 477 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 GJB2P29033 226 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 HMGN5P82970 282 aaKnown RBP13.13□□□□□ -0.31
TRIM3-211ENST00000532542 EPHA10Q5JZY3 1008 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 TM6SF1Q9BZW5 370 aa13.13□□□□□ -0.31
TRIM3-211ENST00000532542 DBNLQ9UJU6 430 aaKnown RBP13.13□□□□□ -0.31
TRIM3-211ENST00000532542 HAUS7Q99871 368 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 DLG5Q8TDM6 1919 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 CDKL5O76039 1030 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 HCLS1P14317 486 aaPredicted RBP13.12□□□□□ -0.31
TRIM3-211ENST00000532542 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 ZNF396Q96N95 335 aaPredicted RBP13.12□□□□□ -0.31
TRIM3-211ENST00000532542 NWD1Q149M9 1564 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms