RNA–Protein interactions for RNA: ENST00000528516.5

LTBP3-210, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 1 (best)

Gene LTBP3, Length 3,935 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-210ENST00000528516 CCDC57Q2TAC2 916 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 HSP90AA4PQ58FG1 418 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 NUP133Q8WUM0 1156 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 TSPYL1Q9H0U9 437 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 TMX1Q9H3N1 280 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 TMEM131LA2VDJ0 1609 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 KIF13AQ9H1H9 1805 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 LIG1P18858 919 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 SKIDA1Q1XH10 827 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 ARHGEF40Q8TER5 1519 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 VPS53Q5VIR6 699 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 COPS6Q7L5N1 327 aa20.88■□□□□ 0.93
LTBP3-210ENST00000528516 HNRNPH2P55795 449 aaKnown RBP20.87■□□□□ 0.93
LTBP3-210ENST00000528516 MED14O60244 1454 aa20.87■□□□□ 0.93
LTBP3-210ENST00000528516 PTCH1Q13635 1447 aa20.87■□□□□ 0.93
LTBP3-210ENST00000528516 POLR3DP05423 398 aaPredicted RBP20.87■□□□□ 0.93
LTBP3-210ENST00000528516 KCNA6P17658 529 aa20.87■□□□□ 0.93
LTBP3-210ENST00000528516 PUS7Q96PZ0 661 aaKnown RBP20.87■□□□□ 0.93
LTBP3-210ENST00000528516 ARGLU1Q9NWB6 273 aaPredicted RBP20.87■□□□□ 0.93
LTBP3-210ENST00000528516 SETBP1Q9Y6X0 1596 aa20.87■□□□□ 0.93
LTBP3-210ENST00000528516 ATP8B2P98198 1209 aa20.87■□□□□ 0.93
LTBP3-210ENST00000528516 ZC3H13Q5T200 1668 aaKnown RBP20.87■□□□□ 0.93
LTBP3-210ENST00000528516 RGS12O14924 1447 aa20.87■□□□□ 0.93
LTBP3-210ENST00000528516 KIAA1210Q9ULL0 1709 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 GPS2Q13227 327 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 TMEM87AQ8NBN3 555 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 MNS1Q8NEH6 495 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 NEK11Q8NG66 645 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 ERO1AQ96HE7 468 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 MRVI1Q9Y6F6 885 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 CCDC171Q6TFL3 1326 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 BRF1Q92994 677 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 TULP4Q9NRJ4 1543 aa20.86■□□□□ 0.93
LTBP3-210ENST00000528516 KCNQ3O43525 872 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 EDC3Q96F86 508 aaKnown RBP20.85■□□□□ 0.93
LTBP3-210ENST00000528516 MARCH6O60337 910 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 ARID5BQ14865 1188 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 ERCC6LQ2NKX8 1250 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 XAGE3Q8WTP9 111 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 ROBO2Q9HCK4 1378 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 CCDC158Q5M9N0 1113 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 UNC5CLQ8IV45 518 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 C10orf67Q8IYJ2 551 aa20.85■□□□□ 0.93
LTBP3-210ENST00000528516 TMCO3Q6UWJ1 677 aa20.84■□□□□ 0.93
LTBP3-210ENST00000528516 PCMTD1Q96MG8 357 aaPredicted RBP20.84■□□□□ 0.93
LTBP3-210ENST00000528516 RBM8AQ9Y5S9 174 aaKnown RBP20.84■□□□□ 0.93
LTBP3-210ENST00000528516 USP27XA6NNY8 438 aa20.84■□□□□ 0.93
LTBP3-210ENST00000528516 RTL1A6NKG5 1358 aa20.84■□□□□ 0.93
LTBP3-210ENST00000528516 LRRFIP1Q32MZ4 808 aaKnown RBP20.84■□□□□ 0.93
LTBP3-210ENST00000528516 USP16Q9Y5T5 823 aa20.84■□□□□ 0.93
LTBP3-210ENST00000528516 HIP1O00291 1037 aa20.83■□□□□ 0.93
LTBP3-210ENST00000528516 ABCF2Q9UG63 623 aa20.83■□□□□ 0.93
LTBP3-210ENST00000528516 BICDL1Q6ZP65 573 aa20.83■□□□□ 0.92
LTBP3-210ENST00000528516 NFATC2IPQ8NCF5 419 aa20.83■□□□□ 0.92
LTBP3-210ENST00000528516 CCDC69A6NI79 296 aa20.83■□□□□ 0.92
LTBP3-210ENST00000528516 LARP1Q6PKG0 1096 aaKnown RBP20.83■□□□□ 0.92
LTBP3-210ENST00000528516 ANKRD24Q8TF21 1146 aa20.83■□□□□ 0.92
LTBP3-210ENST00000528516 UBXN4Q92575 508 aa20.83■□□□□ 0.92
LTBP3-210ENST00000528516 NEURL4Q96JN8 1562 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 ARHGAP29Q52LW3 1261 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 RAD50Q92878 1312 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 SLC4A8Q2Y0W8 1093 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 PTPRMP28827 1452 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 ERICH2A1L162 156 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 IFIT1P09914 478 aaKnown RBP20.82■□□□□ 0.92
LTBP3-210ENST00000528516 SNW1Q13573 536 aaKnown RBP20.82■□□□□ 0.92
LTBP3-210ENST00000528516 SAFBQ15424 915 aaKnown RBP eCLIP20.82■□□□□ 0.92
LTBP3-210ENST00000528516 TTC6Q86TZ1 520 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 CCDC34Q96HJ3 373 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 FUCA2Q9BTY2 467 aa20.82■□□□□ 0.92
LTBP3-210ENST00000528516 PIK3R4Q99570 1358 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 CHL1O00533 1208 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 SERPINC1P01008 464 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 RUFY3Q7L099 469 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 RSPH14Q9UHP6 348 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 SNX14Q9Y5W7 946 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 RPAP1Q9BWH6 1393 aaPredicted RBP20.81■□□□□ 0.92
LTBP3-210ENST00000528516 CCDC144BQ3MJ40 725 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 MTMR6Q9Y217 621 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 KRBA2Q6ZNG9 492 aa20.81■□□□□ 0.92
LTBP3-210ENST00000528516 ZSCAN31Q96LW9 406 aaPredicted RBP20.8■□□□□ 0.92
LTBP3-210ENST00000528516 PRR36Q9H6K5 1346 aa20.8■□□□□ 0.92
LTBP3-210ENST00000528516 IFT172Q9UG01 1749 aa20.8■□□□□ 0.92
LTBP3-210ENST00000528516 HSPA4P34932 840 aa20.8■□□□□ 0.92
LTBP3-210ENST00000528516 DDX19AQ9NUU7 478 aaKnown RBP20.8■□□□□ 0.92
LTBP3-210ENST00000528516 CAPN2P17655 700 aa20.79■□□□□ 0.92
LTBP3-210ENST00000528516 ANKRD1Q15327 319 aa20.79■□□□□ 0.92
LTBP3-210ENST00000528516 SYT10Q6XYQ8 523 aa20.79■□□□□ 0.92
LTBP3-210ENST00000528516 CCDC129Q6ZRS4 1044 aa20.79■□□□□ 0.92
LTBP3-210ENST00000528516 DDX17Q92841 729 aaKnown RBP20.79■□□□□ 0.92
LTBP3-210ENST00000528516 IQSEC3Q9UPP2 1182 aaPredicted RBP20.79■□□□□ 0.92
LTBP3-210ENST00000528516 LARGE1O95461 756 aa20.79■□□□□ 0.92
LTBP3-210ENST00000528516 FAM227BQ96M60 508 aa20.79■□□□□ 0.92
LTBP3-210ENST00000528516 LMBR1LQ6UX01 489 aa20.78■□□□□ 0.92
LTBP3-210ENST00000528516 LRRC8AQ8IWT6 810 aa20.78■□□□□ 0.92
LTBP3-210ENST00000528516 RASEFQ8IZ41 740 aa20.78■□□□□ 0.92
LTBP3-210ENST00000528516 RBM6P78332 1123 aaKnown RBP20.78■□□□□ 0.92
LTBP3-210ENST00000528516 NMIQ13287 307 aaPredicted RBP20.78■□□□□ 0.92
LTBP3-210ENST00000528516 TBX22Q9Y458 520 aa20.78■□□□□ 0.92
LTBP3-210ENST00000528516 NUTM2BA6NNL0 878 aaPredicted RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms