RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 HSPA8P11142 646 aaKnown RBP30.83■■■□□ 2.53
CPSF1-202ENST00000527827 MAP2K1Q02750 393 aaPredicted RBP30.83■■■□□ 2.53
CPSF1-202ENST00000527827 KIAA2012Q0VF49 1180 aa30.83■■■□□ 2.53
CPSF1-202ENST00000527827 GRAPQ13588 217 aa30.83■■■□□ 2.53
CPSF1-202ENST00000527827 DDX46Q7L014 1031 aaKnown RBP30.83■■■□□ 2.53
CPSF1-202ENST00000527827 GRAPLQ8TC17 118 aaPredicted RBP30.83■■■□□ 2.53
CPSF1-202ENST00000527827 TRIM35Q9UPQ4 493 aa30.83■■■□□ 2.53
CPSF1-202ENST00000527827 DDX60Q8IY21 1712 aaKnown RBP30.82■■■□□ 2.52
CPSF1-202ENST00000527827 GMPSP49915 693 aaPredicted RBP30.82■■■□□ 2.52
CPSF1-202ENST00000527827 CHPF2Q9P2E5 772 aa30.82■■■□□ 2.52
CPSF1-202ENST00000527827 DUOX1Q9NRD9 1551 aa30.81■■■□□ 2.52
CPSF1-202ENST00000527827 ZNF428Q96B54 188 aa30.81■■■□□ 2.52
CPSF1-202ENST00000527827 CAPNS2Q96L46 248 aa30.81■■■□□ 2.52
CPSF1-202ENST00000527827 LRRC37AA6NMS7 1700 aa30.81■■■□□ 2.52
CPSF1-202ENST00000527827 MYBBP1AQ9BQG0 1328 aaKnown RBP30.8■■■□□ 2.52
CPSF1-202ENST00000527827 CIAPIN1Q6FI81 312 aa30.8■■■□□ 2.52
CPSF1-202ENST00000527827 LAS1LQ9Y4W2 734 aaKnown RBP30.8■■■□□ 2.52
CPSF1-202ENST00000527827 CYP4F22Q6NT55 531 aa30.79■■■□□ 2.52
CPSF1-202ENST00000527827 RUNDC1Q96C34 613 aa30.79■■■□□ 2.52
CPSF1-202ENST00000527827 TLL2Q9Y6L7 1015 aa30.79■■■□□ 2.52
CPSF1-202ENST00000527827 RAD17O75943 681 aa30.78■■■□□ 2.52
CPSF1-202ENST00000527827 PLBD2Q8NHP8 589 aa30.78■■■□□ 2.52
CPSF1-202ENST00000527827 CDHR2Q9BYE9 1310 aa30.77■■■□□ 2.52
CPSF1-202ENST00000527827 ECE1P42892 770 aa30.77■■■□□ 2.52
CPSF1-202ENST00000527827 HDGFL1Q5TGJ6 251 aa30.77■■■□□ 2.52
CPSF1-202ENST00000527827 PAXIP1Q6ZW49 1069 aaPredicted RBP30.77■■■□□ 2.52
CPSF1-202ENST00000527827 PGAP2Q9UHJ9 254 aa30.77■■■□□ 2.52
CPSF1-202ENST00000527827 YDJCA8MPS7 323 aa30.76■■■□□ 2.51
CPSF1-202ENST00000527827 TNIP1Q15025 636 aa30.76■■■□□ 2.51
CPSF1-202ENST00000527827 ISCA1Q9BUE6 129 aa30.76■■■□□ 2.51
CPSF1-202ENST00000527827 HOXB7P09629 217 aa30.75■■■□□ 2.51
CPSF1-202ENST00000527827 HIRAP54198 1017 aaPredicted RBP30.75■■■□□ 2.51
CPSF1-202ENST00000527827 ANKRD13DQ6ZTN6 518 aa30.75■■■□□ 2.51
CPSF1-202ENST00000527827 TMC4Q7Z404 712 aa30.75■■■□□ 2.51
CPSF1-202ENST00000527827 GPR101Q96P66 508 aaPredicted RBP30.75■■■□□ 2.51
CPSF1-202ENST00000527827 GLIS2Q9BZE0 524 aaPredicted RBP30.75■■■□□ 2.51
CPSF1-202ENST00000527827 DDX10Q13206 875 aaKnown RBP30.74■■■□□ 2.51
CPSF1-202ENST00000527827 GRM1Q13255 1194 aa30.74■■■□□ 2.51
CPSF1-202ENST00000527827 BCL2L13Q9BXK5 485 aa30.74■■■□□ 2.51
CPSF1-202ENST00000527827 COL4A1P02462 1669 aa30.74■■■□□ 2.51
CPSF1-202ENST00000527827 FAM89AQ96GI7 184 aa30.73■■■□□ 2.51
CPSF1-202ENST00000527827 DBF4Q9UBU7 674 aaPredicted RBP30.73■■■□□ 2.51
CPSF1-202ENST00000527827 SF3B3Q15393 1217 aaKnown RBP30.72■■■□□ 2.51
CPSF1-202ENST00000527827 TRPM4Q8TD43 1214 aa30.72■■■□□ 2.51
CPSF1-202ENST00000527827 CELF1Q92879 486 aaKnown RBP30.72■■■□□ 2.51
CPSF1-202ENST00000527827 ADAMTS8Q9UP79 889 aa30.72■■■□□ 2.51
CPSF1-202ENST00000527827 SHTN1A0MZ66 631 aa30.71■■■□□ 2.51
CPSF1-202ENST00000527827 ATP5J2-PTCD1G3V325 749 aa30.71■■■□□ 2.51
CPSF1-202ENST00000527827 CELF2O95319 508 aaKnown RBP30.71■■■□□ 2.51
CPSF1-202ENST00000527827 WDR43Q15061 677 aaKnown RBP eCLIP30.71■■■□□ 2.519e-14■□□□□ 10.2
CPSF1-202ENST00000527827 SAPCD2Q86UD0 394 aa30.71■■■□□ 2.51
CPSF1-202ENST00000527827 ZC3H15Q8WU90 426 aaKnown RBP30.71■■■□□ 2.51
CPSF1-202ENST00000527827 CNOT7Q9UIV1 285 aaKnown RBP30.7■■■□□ 2.51
CPSF1-202ENST00000527827 AOC2O75106 756 aa30.69■■■□□ 2.5
CPSF1-202ENST00000527827 DUSP27Q5VZP5 1158 aa30.69■■■□□ 2.5
CPSF1-202ENST00000527827 CFAP44Q96MT7 982 aa30.69■■■□□ 2.5
CPSF1-202ENST00000527827 HYPKQ9NX55 129 aa30.68■■■□□ 2.5
CPSF1-202ENST00000527827 NSFL1CQ9UNZ2 370 aaKnown RBP30.68■■■□□ 2.5
CPSF1-202ENST00000527827 MAP2K2P36507 400 aa30.67■■■□□ 2.5
CPSF1-202ENST00000527827 WASHC4Q2M389 1173 aa30.67■■■□□ 2.5
CPSF1-202ENST00000527827 BEGAINQ9BUH8 593 aa30.67■■■□□ 2.5
CPSF1-202ENST00000527827 ZBTB12Q9Y330 459 aaPredicted RBP30.67■■■□□ 2.5
CPSF1-202ENST00000527827 TRIM28Q13263 835 aaKnown RBP30.66■■■□□ 2.5
CPSF1-202ENST00000527827 RTL5Q5HYW3 569 aaPredicted RBP30.66■■■□□ 2.5
CPSF1-202ENST00000527827 MICALL2Q8IY33 904 aa30.66■■■□□ 2.5
CPSF1-202ENST00000527827 ABHD8Q96I13 439 aa30.66■■■□□ 2.5
CPSF1-202ENST00000527827 MBIPQ9NS73 344 aa30.66■■■□□ 2.5
CPSF1-202ENST00000527827 POLLQ9UGP5 575 aa30.66■■■□□ 2.5
CPSF1-202ENST00000527827 H7C1D1 291 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 PSMD14O00487 310 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 GPSM2P81274 684 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 CDC37L1Q7L3B6 337 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 DPF2Q92785 391 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 HHIPL1Q96JK4 782 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 DBNDD1Q9H9R9 158 aa30.65■■■□□ 2.5
CPSF1-202ENST00000527827 ZNF408Q9H9D4 720 aa30.64■■■□□ 2.5
CPSF1-202ENST00000527827 IRS4O14654 1257 aaPredicted RBP30.63■■■□□ 2.49
CPSF1-202ENST00000527827 RIMBP2O15034 1052 aa30.63■■■□□ 2.49
CPSF1-202ENST00000527827 ZNF853P0CG23 659 aa30.63■■■□□ 2.49
CPSF1-202ENST00000527827 C6orf229H3BNL8 230 aa30.62■■■□□ 2.49
CPSF1-202ENST00000527827 TSKSQ9UJT2 592 aa30.62■■■□□ 2.49
CPSF1-202ENST00000527827 POLR2AP24928 1970 aaKnown RBP30.62■■■□□ 2.49
CPSF1-202ENST00000527827 SAMD7Q7Z3H4 446 aa30.61■■■□□ 2.49
CPSF1-202ENST00000527827 KCNQ5Q9NR82 932 aa30.61■■■□□ 2.49
CPSF1-202ENST00000527827 RPS8P62241 208 aaKnown RBP30.6■■■□□ 2.49
CPSF1-202ENST00000527827 DLK2Q6UY11 383 aa30.6■■■□□ 2.49
CPSF1-202ENST00000527827 USP48Q86UV5 1035 aa30.6■■■□□ 2.49
CPSF1-202ENST00000527827 RTL9Q8NET4 1388 aa30.6■■■□□ 2.49
CPSF1-202ENST00000527827 SCN9AQ15858 1988 aa30.59■■■□□ 2.49
CPSF1-202ENST00000527827 ECE2O60344 883 aa30.59■■■□□ 2.49
CPSF1-202ENST00000527827 EGFRP00533 1210 aa30.59■■■□□ 2.49
CPSF1-202ENST00000527827 DOK7Q18PE1 504 aa30.59■■■□□ 2.49
CPSF1-202ENST00000527827 RIC3Q7Z5B4 369 aa30.59■■■□□ 2.49
CPSF1-202ENST00000527827 TBC1D16Q8TBP0 767 aa30.59■■■□□ 2.49
CPSF1-202ENST00000527827 PHAXQ9H814 394 aaKnown RBP30.59■■■□□ 2.49
CPSF1-202ENST00000527827 ZBTB38Q8NAP3 1195 aaPredicted RBP30.58■■■□□ 2.49
CPSF1-202ENST00000527827 EYA3Q99504 573 aa30.58■■■□□ 2.49
CPSF1-202ENST00000527827 RPS12P25398 132 aaKnown RBP30.57■■■□□ 2.48
CPSF1-202ENST00000527827 TBC1D10BQ4KMP7 808 aaPredicted RBP30.57■■■□□ 2.48
CPSF1-202ENST00000527827 SEC31BQ9NQW1 1179 aa30.57■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms