RNA–Protein interactions for RNA: ENST00000527551.1

USH1C-206, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 371 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-206ENST00000527551 TMC4Q7Z404 712 aa16.14■□□□□ 0.17
USH1C-206ENST00000527551 FRAT1Q92837 279 aaPredicted RBP16.14■□□□□ 0.17
USH1C-206ENST00000527551 HDAC5Q9UQL6 1122 aa16.14■□□□□ 0.17
USH1C-206ENST00000527551 BBOX1O75936 387 aa16.13■□□□□ 0.17
USH1C-206ENST00000527551 TRIM27P14373 513 aa16.13■□□□□ 0.17
USH1C-206ENST00000527551 CC2D2BQ6DHV5 1058 aa16.13■□□□□ 0.17
USH1C-206ENST00000527551 C3orf67Q6ZVT6 689 aa16.13■□□□□ 0.17
USH1C-206ENST00000527551 FER1L6Q2WGJ9 1857 aa16.13■□□□□ 0.17
USH1C-206ENST00000527551 CTSWP56202 376 aa16.12■□□□□ 0.17
USH1C-206ENST00000527551 GRAPQ13588 217 aa16.11■□□□□ 0.17
USH1C-206ENST00000527551 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.11■□□□□ 0.17
USH1C-206ENST00000527551 GRAPLQ8TC17 118 aaPredicted RBP16.11■□□□□ 0.17
USH1C-206ENST00000527551 C7orf43Q8WVR3 580 aa16.11■□□□□ 0.17
USH1C-206ENST00000527551 TMX4Q9H1E5 349 aaPredicted RBP16.11■□□□□ 0.17
USH1C-206ENST00000527551 LRRC37AA6NMS7 1700 aa16.11■□□□□ 0.17
USH1C-206ENST00000527551 CSF1RP07333 972 aa16.1■□□□□ 0.17
USH1C-206ENST00000527551 TTLL11Q8NHH1 800 aa16.1■□□□□ 0.17
USH1C-206ENST00000527551 JARID2Q92833 1246 aaPredicted RBP16.1■□□□□ 0.17
USH1C-206ENST00000527551 USP44Q9H0E7 712 aa16.1■□□□□ 0.17
USH1C-206ENST00000527551 TAF1P21675 1872 aa16.1■□□□□ 0.17
USH1C-206ENST00000527551 PPEF1O14829 653 aaPredicted RBP16.09■□□□□ 0.17
USH1C-206ENST00000527551 CCDC93Q567U6 631 aa16.09■□□□□ 0.17
USH1C-206ENST00000527551 FTSJ3Q8IY81 847 aaKnown RBP16.09■□□□□ 0.17
USH1C-206ENST00000527551 DZIP1LQ8IYY4 767 aaKnown RBP16.09■□□□□ 0.17
USH1C-206ENST00000527551 WWC3Q9ULE0 1092 aa16.09■□□□□ 0.17
USH1C-206ENST00000527551 LTBP3Q9NS15 1303 aa16.09■□□□□ 0.17
USH1C-206ENST00000527551 SBF1O95248 1867 aa16.09■□□□□ 0.17
USH1C-206ENST00000527551 C21orf2O43822 256 aa16.08■□□□□ 0.16
USH1C-206ENST00000527551 GNAI3P08754 354 aa16.08■□□□□ 0.16
USH1C-206ENST00000527551 NBPF7P0C2Y1 421 aaPredicted RBP16.08■□□□□ 0.16
USH1C-206ENST00000527551 ARHGAP27Q6ZUM4 889 aa16.08■□□□□ 0.16
USH1C-206ENST00000527551 SP8Q8IXZ3 490 aa16.08■□□□□ 0.16
USH1C-206ENST00000527551 RTKN2Q8IZC4 609 aa16.08■□□□□ 0.16
USH1C-206ENST00000527551 CDC5LQ99459 802 aaKnown RBP16.08■□□□□ 0.16
USH1C-206ENST00000527551 ATP6V0A2Q9Y487 856 aa16.08■□□□□ 0.16
USH1C-206ENST00000527551 UBTFL1P0CB47 393 aaPredicted RBP16.07■□□□□ 0.16
USH1C-206ENST00000527551 RPS8P62241 208 aaKnown RBP16.07■□□□□ 0.16
USH1C-206ENST00000527551 FOXO4P98177 505 aa16.07■□□□□ 0.16
USH1C-206ENST00000527551 DICER1Q9UPY3 1922 aaKnown RBP16.07■□□□□ 0.16
USH1C-206ENST00000527551 SNED1Q8TER0 1413 aa16.06■□□□□ 0.16
USH1C-206ENST00000527551 RABL6Q3YEC7 729 aaPredicted RBP16.06■□□□□ 0.16
USH1C-206ENST00000527551 CLUAP1Q96AJ1 413 aa16.06■□□□□ 0.16
USH1C-206ENST00000527551 CCDC88AQ3V6T2 1871 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 SPEF2Q9C093 1822 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 PDE3AQ14432 1141 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 LMBR1LQ6UX01 489 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 ANKRD18AQ8IVF6 992 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 TMEM57Q8N5G2 664 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 CELF1Q92879 486 aaKnown RBP16.05■□□□□ 0.16
USH1C-206ENST00000527551 SUCLG2Q96I99 432 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 GREM2Q9H772 168 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 UTRNP46939 3433 aa16.05■□□□□ 0.16
USH1C-206ENST00000527551 ANKRD18BA2A2Z9 1011 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 ITGA6P23229 1130 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 IFIT5Q13325 482 aaKnown RBP16.04■□□□□ 0.16
USH1C-206ENST00000527551 CCDC57Q2TAC2 916 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 KAZALD1Q96I82 304 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 PSMD1Q99460 953 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 TAOK3Q9H2K8 898 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 CHMP4BQ9H444 224 aaKnown RBP16.04■□□□□ 0.16
USH1C-206ENST00000527551 SEC31BQ9NQW1 1179 aa16.04■□□□□ 0.16
USH1C-206ENST00000527551 NFKBIEO00221 500 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 LMNB1P20700 586 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 IGHMBP2P38935 993 aaKnown RBP16.03■□□□□ 0.16
USH1C-206ENST00000527551 FKBP4Q02790 459 aaKnown RBP eCLIP16.03■□□□□ 0.16
USH1C-206ENST00000527551 FAM161AQ3B820 660 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 EPHA10Q5JZY3 1008 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 SUPT20HQ8NEM7 779 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 VPS33BQ9H267 617 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 BICC1Q9H694 974 aaKnown RBP16.03■□□□□ 0.16
USH1C-206ENST00000527551 BSDC1Q9NW68 430 aaPredicted RBP16.03■□□□□ 0.16
USH1C-206ENST00000527551 ZNF219Q9P2Y4 722 aaPredicted RBP16.03■□□□□ 0.16
USH1C-206ENST00000527551 TNNQ9UQP3 1299 aa16.03■□□□□ 0.16
USH1C-206ENST00000527551 LTBP1Q14766 1721 aa16.02■□□□□ 0.16
USH1C-206ENST00000527551 ZC3H4Q9UPT8 1303 aaKnown RBP16.02■□□□□ 0.16
USH1C-206ENST00000527551 CCDC85AQ96PX6 553 aaPredicted RBP16.02■□□□□ 0.16
USH1C-206ENST00000527551 MEIS3Q99687 375 aa16.02■□□□□ 0.16
USH1C-206ENST00000527551 CHMP3Q9Y3E7 222 aa16.02■□□□□ 0.16
USH1C-206ENST00000527551 COL4A1P02462 1669 aa16.02■□□□□ 0.15
USH1C-206ENST00000527551 RLBP1P12271 317 aa16.01■□□□□ 0.15
USH1C-206ENST00000527551 ITPRIPQ8IWB1 547 aa16.01■□□□□ 0.15
USH1C-206ENST00000527551 MPNDQ8N594 471 aa16.01■□□□□ 0.15
USH1C-206ENST00000527551 ANKRD44Q8N8A2 993 aa16.01■□□□□ 0.15
USH1C-206ENST00000527551 MPHOSPH8Q99549 860 aa16.01■□□□□ 0.15
USH1C-206ENST00000527551 RTFDC1Q9BY42 306 aaPredicted RBP16.01■□□□□ 0.15
USH1C-206ENST00000527551 TIAM2Q8IVF5 1701 aa16■□□□□ 0.15
USH1C-206ENST00000527551 GNAI2P04899 355 aa16■□□□□ 0.15
USH1C-206ENST00000527551 DPP8Q6V1X1 898 aaPredicted RBP16■□□□□ 0.15
USH1C-206ENST00000527551 PODXL2Q9NZ53 605 aa16■□□□□ 0.15
USH1C-206ENST00000527551 DDX19BQ9UMR2 479 aa16■□□□□ 0.15
USH1C-206ENST00000527551 ZBTB7BO15156 539 aaPredicted RBP15.99■□□□□ 0.15
USH1C-206ENST00000527551 MTX1Q13505 466 aa15.99■□□□□ 0.15
USH1C-206ENST00000527551 MVPQ14764 893 aaKnown RBP15.99■□□□□ 0.15
USH1C-206ENST00000527551 TAF7LQ5H9L4 462 aa15.99■□□□□ 0.15
USH1C-206ENST00000527551 PANK1Q8TE04 598 aa15.99■□□□□ 0.15
USH1C-206ENST00000527551 ANKRD2Q9GZV1 360 aa15.99■□□□□ 0.15
USH1C-206ENST00000527551 LRRFIP2Q9Y608 721 aaKnown RBP15.99■□□□□ 0.15
USH1C-206ENST00000527551 A0A1B0GUL6 1792 aa15.99■□□□□ 0.15
USH1C-206ENST00000527551 XDHP47989 1333 aa15.98■□□□□ 0.15
USH1C-206ENST00000527551 RASSF7Q02833 373 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms