RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 H0YIN7 160 aa13.59□□□□□ -0.23
NEDD8-205ENST00000527046 STYK1Q6J9G0 422 aa13.59□□□□□ -0.23
NEDD8-205ENST00000527046 MASTLQ96GX5 879 aa13.59□□□□□ -0.23
NEDD8-205ENST00000527046 GREM2Q9H772 168 aa13.59□□□□□ -0.23
NEDD8-205ENST00000527046 NPR1P16066 1061 aa13.58□□□□□ -0.24
NEDD8-205ENST00000527046 YBX3P16989 372 aaKnown RBP eCLIP13.58□□□□□ -0.24
NEDD8-205ENST00000527046 CTSWP56202 376 aa13.58□□□□□ -0.24
NEDD8-205ENST00000527046 LMBR1LQ6UX01 489 aa13.58□□□□□ -0.24
NEDD8-205ENST00000527046 CELF1Q92879 486 aaKnown RBP13.58□□□□□ -0.24
NEDD8-205ENST00000527046 CRAMP1Q96RY5 1269 aa13.58□□□□□ -0.24
NEDD8-205ENST00000527046 BICC1Q9H694 974 aaKnown RBP13.58□□□□□ -0.24
NEDD8-205ENST00000527046 ZBTB40Q9NUA8 1239 aa13.58□□□□□ -0.24
NEDD8-205ENST00000527046 PDZRN3Q9UPQ7 1066 aa13.58□□□□□ -0.24
NEDD8-205ENST00000527046 NPHP1O15259 732 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 RFX5P48382 616 aaPredicted RBP13.57□□□□□ -0.24
NEDD8-205ENST00000527046 OLFM4Q6UX06 510 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 ITPRIPQ8IWB1 547 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 FTSJ3Q8IY81 847 aaKnown RBP13.57□□□□□ -0.24
NEDD8-205ENST00000527046 CCDC85AQ96PX6 553 aaPredicted RBP13.57□□□□□ -0.24
NEDD8-205ENST00000527046 PIM2Q9P1W9 311 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 WWC3Q9ULE0 1092 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 LRRFIP2Q9Y608 721 aaKnown RBP13.57□□□□□ -0.24
NEDD8-205ENST00000527046 SRCAPQ6ZRS2 3230 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 RTL9Q8NET4 1388 aa13.57□□□□□ -0.24
NEDD8-205ENST00000527046 SNED1Q8TER0 1413 aa13.56□□□□□ -0.24
NEDD8-205ENST00000527046 MS4A1P11836 297 aa13.56□□□□□ -0.24
NEDD8-205ENST00000527046 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.56□□□□□ -0.24
NEDD8-205ENST00000527046 ZNF622Q969S3 477 aaKnown RBP eCLIP13.56□□□□□ -0.24
NEDD8-205ENST00000527046 UBTFL1P0CB47 393 aaPredicted RBP13.55□□□□□ -0.24
NEDD8-205ENST00000527046 MTX1Q13505 466 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 FAM161AQ3B820 660 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 SIRT2Q8IXJ6 389 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 TTLL6Q8N841 843 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 RBM17Q96I25 401 aaKnown RBP13.55□□□□□ -0.24
NEDD8-205ENST00000527046 CRBNQ96SW2 442 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 C1orf115Q9H7X2 142 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 CACNA1SQ13698 1873 aa13.55□□□□□ -0.24
NEDD8-205ENST00000527046 GNAI3P08754 354 aa13.54□□□□□ -0.24
NEDD8-205ENST00000527046 ITGA6P23229 1130 aa13.54□□□□□ -0.24
NEDD8-205ENST00000527046 RPS8P62241 208 aaKnown RBP13.54□□□□□ -0.24
NEDD8-205ENST00000527046 GRAPQ13588 217 aa13.54□□□□□ -0.24
NEDD8-205ENST00000527046 CCDC152Q4G0S7 254 aa13.54□□□□□ -0.24
NEDD8-205ENST00000527046 PRPF40BQ6NWY9 871 aaKnown RBP13.54□□□□□ -0.24
NEDD8-205ENST00000527046 GRAPLQ8TC17 118 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-205ENST00000527046 CNKSR1Q969H4 720 aa13.54□□□□□ -0.24
NEDD8-205ENST00000527046 ZNF594Q96JF6 807 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-205ENST00000527046 ARFGEF1Q9Y6D6 1849 aa13.54□□□□□ -0.24
NEDD8-205ENST00000527046 PNMA6EA0A0J9YXQ4 647 aa13.53□□□□□ -0.24
NEDD8-205ENST00000527046 WTIPA6NIX2 430 aaPredicted RBP13.53□□□□□ -0.24
NEDD8-205ENST00000527046 BBOX1O75936 387 aa13.53□□□□□ -0.24
NEDD8-205ENST00000527046 HSP90B1P14625 803 aaKnown RBP13.53□□□□□ -0.24
NEDD8-205ENST00000527046 ALDH1B1P30837 517 aa13.53□□□□□ -0.24
NEDD8-205ENST00000527046 PRELPP51888 382 aa13.53□□□□□ -0.24
NEDD8-205ENST00000527046 ATP8B2P98198 1209 aa13.53□□□□□ -0.24
NEDD8-205ENST00000527046 RPGRQ92834 1020 aaKnown RBP13.53□□□□□ -0.24
NEDD8-205ENST00000527046 PUS3Q9BZE2 481 aaKnown RBP13.53□□□□□ -0.24
NEDD8-205ENST00000527046 DDX19BQ9UMR2 479 aa13.53□□□□□ -0.24
NEDD8-205ENST00000527046 GNAI2P04899 355 aa13.52□□□□□ -0.25
NEDD8-205ENST00000527046 PTPN12Q05209 780 aaKnown RBP13.52□□□□□ -0.25
NEDD8-205ENST00000527046 POLA2Q14181 598 aa13.52□□□□□ -0.25
NEDD8-205ENST00000527046 DALRD3Q5D0E6 543 aaKnown RBP13.52□□□□□ -0.25
NEDD8-205ENST00000527046 DDX46Q7L014 1031 aaKnown RBP13.52□□□□□ -0.25
NEDD8-205ENST00000527046 KLHDC4Q8TBB5 520 aa13.52□□□□□ -0.25
NEDD8-205ENST00000527046 BCS1LQ9Y276 419 aa13.52□□□□□ -0.25
NEDD8-205ENST00000527046 LRRC37AA6NMS7 1700 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 C21orf2O43822 256 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 CEP85Q6P2H3 762 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 SP8Q8IXZ3 490 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 EXOC6Q8TAG9 804 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 ATP6V0A2Q9Y487 856 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 RIPOR2Q9Y4F9 1068 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 PCDHB15Q9Y5E8 787 aa13.51□□□□□ -0.25
NEDD8-205ENST00000527046 LTBP1Q14766 1721 aa13.5□□□□□ -0.25
NEDD8-205ENST00000527046 IRX6P78412 446 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-205ENST00000527046 ATG9AQ7Z3C6 839 aa13.5□□□□□ -0.25
NEDD8-205ENST00000527046 SSH3Q8TE77 659 aa13.5□□□□□ -0.25
NEDD8-205ENST00000527046 BSDC1Q9NW68 430 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-205ENST00000527046 ZNF219Q9P2Y4 722 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-205ENST00000527046 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-205ENST00000527046 FER1L6Q2WGJ9 1857 aa13.5□□□□□ -0.25
NEDD8-205ENST00000527046 SPEF2Q9C093 1822 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 ANKRD18BA2A2Z9 1011 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 NFKBIEO00221 500 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 PPEF1O14829 653 aaPredicted RBP13.49□□□□□ -0.25
NEDD8-205ENST00000527046 IFIT5Q13325 482 aaKnown RBP13.49□□□□□ -0.25
NEDD8-205ENST00000527046 LRRC24Q50LG9 513 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 COPRSQ9NQ92 184 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 MINPP1Q9UNW1 487 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 PA2G4Q9UQ80 394 aaKnown RBP13.49□□□□□ -0.25
NEDD8-205ENST00000527046 DUOX1Q9NRD9 1551 aa13.49□□□□□ -0.25
NEDD8-205ENST00000527046 GPSM2P81274 684 aa13.48□□□□□ -0.25
NEDD8-205ENST00000527046 ANKRD18AQ8IVF6 992 aa13.48□□□□□ -0.25
NEDD8-205ENST00000527046 SBF1O95248 1867 aa13.47□□□□□ -0.25
NEDD8-205ENST00000527046 SRGAP3O43295 1099 aa13.47□□□□□ -0.25
NEDD8-205ENST00000527046 CCDC57Q2TAC2 916 aa13.47□□□□□ -0.25
NEDD8-205ENST00000527046 VGLL2Q8N8G2 317 aa13.47□□□□□ -0.25
NEDD8-205ENST00000527046 CDC5LQ99459 802 aaKnown RBP13.47□□□□□ -0.25
NEDD8-205ENST00000527046 RTFDC1Q9BY42 306 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-205ENST00000527046 HDAC5Q9UQL6 1122 aa13.47□□□□□ -0.25
NEDD8-205ENST00000527046 CHMP3Q9Y3E7 222 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms