RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PIP4K2AP48426 406 aaPredicted RBP25.31■■□□□ 1.64
VPS28-205ENST00000526204 CASP7P55210 303 aa25.31■■□□□ 1.64
VPS28-205ENST00000526204 ZNF589Q86UQ0 364 aaPredicted RBP25.31■■□□□ 1.64
VPS28-205ENST00000526204 FIBPO43427 364 aa25.31■■□□□ 1.64
VPS28-205ENST00000526204 NECAB1Q8N987 351 aa25.31■■□□□ 1.64
VPS28-205ENST00000526204 DDX54Q8TDD1 881 aaKnown RBP25.31■■□□□ 1.64
VPS28-205ENST00000526204 ATP5J2-PTCD1G3V325 749 aa25.3■■□□□ 1.64
VPS28-205ENST00000526204 ZNF500O60304 480 aaPredicted RBP25.3■■□□□ 1.64
VPS28-205ENST00000526204 PTCD1O75127 700 aaKnown RBP25.3■■□□□ 1.64
VPS28-205ENST00000526204 LARP1BQ659C4 914 aaKnown RBP25.3■■□□□ 1.64
VPS28-205ENST00000526204 JARID2Q92833 1246 aaPredicted RBP25.3■■□□□ 1.64
VPS28-205ENST00000526204 VPS37CA5D8V6 355 aaPredicted RBP25.3■■□□□ 1.64
VPS28-205ENST00000526204 DNM1Q05193 864 aaKnown RBP25.3■■□□□ 1.64
VPS28-205ENST00000526204 HAUS7Q99871 368 aa25.3■■□□□ 1.64
VPS28-205ENST00000526204 ZKSCAN5Q9Y2L8 839 aa25.29■■□□□ 1.64
VPS28-205ENST00000526204 OFD1O75665 1012 aa25.28■■□□□ 1.64
VPS28-205ENST00000526204 HSPA2P54652 639 aa25.28■■□□□ 1.64
VPS28-205ENST00000526204 TICAM2Q86XR7 235 aa25.28■■□□□ 1.64
VPS28-205ENST00000526204 H7C1W4 665 aa25.28■■□□□ 1.64
VPS28-205ENST00000526204 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.28■■□□□ 1.64
VPS28-205ENST00000526204 EDC3Q96F86 508 aaKnown RBP25.28■■□□□ 1.64
VPS28-205ENST00000526204 U3KPZ7 1027 aaPredicted RBP25.28■■□□□ 1.64
VPS28-205ENST00000526204 PARP4Q9UKK3 1724 aaKnown RBP25.27■■□□□ 1.64
VPS28-205ENST00000526204 LMBR1LQ6UX01 489 aa25.27■■□□□ 1.64
VPS28-205ENST00000526204 PCDH11XQ9BZA7 1347 aa25.27■■□□□ 1.64
VPS28-205ENST00000526204 PCDH11YQ9BZA8 1340 aa25.27■■□□□ 1.64
VPS28-205ENST00000526204 ARFGEF2Q9Y6D5 1785 aa25.27■■□□□ 1.64
VPS28-205ENST00000526204 TOB2Q14106 344 aaPredicted RBP25.27■■□□□ 1.64
VPS28-205ENST00000526204 ERVV-2B6SEH9 535 aa25.26■■□□□ 1.63
VPS28-205ENST00000526204 MCMDC2Q4G0Z9 681 aa25.26■■□□□ 1.63
VPS28-205ENST00000526204 DBNDD2Q9BQY9 259 aa25.26■■□□□ 1.63
VPS28-205ENST00000526204 TCHHQ07283 1943 aa25.26■■□□□ 1.63
VPS28-205ENST00000526204 LAMB4A4D0S4 1761 aa25.26■■□□□ 1.63
VPS28-205ENST00000526204 AFDNP55196 1824 aaKnown RBP25.26■■□□□ 1.63
VPS28-205ENST00000526204 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.25■■□□□ 1.63
VPS28-205ENST00000526204 KRT85P78386 507 aa25.25■■□□□ 1.63
VPS28-205ENST00000526204 FOXO4P98177 505 aa25.25■■□□□ 1.63
VPS28-205ENST00000526204 ZCRB1Q8TBF4 217 aaKnown RBP25.25■■□□□ 1.63
VPS28-205ENST00000526204 DNAJC2Q99543 621 aaKnown RBP25.25■■□□□ 1.63
VPS28-205ENST00000526204 GPR108Q9NPR9 543 aa25.25■■□□□ 1.63
VPS28-205ENST00000526204 CWC25Q9NXE8 425 aaPredicted RBP25.25■■□□□ 1.63
VPS28-205ENST00000526204 GLI3P10071 1580 aa25.24■■□□□ 1.63
VPS28-205ENST00000526204 NBPF26B4DH59 902 aa25.24■■□□□ 1.63
VPS28-205ENST00000526204 NBPF14Q5TI25 921 aa25.24■■□□□ 1.63
VPS28-205ENST00000526204 NBPF10Q6P3W6 841 aaKnown RBP25.24■■□□□ 1.63
VPS28-205ENST00000526204 NBPF15Q8N660 670 aa25.24■■□□□ 1.63
VPS28-205ENST00000526204 NEK1Q96PY6 1258 aa25.24■■□□□ 1.63
VPS28-205ENST00000526204 TAF6LQ9Y6J9 622 aa25.24■■□□□ 1.63
VPS28-205ENST00000526204 ELP1O95163 1332 aa25.23■■□□□ 1.63
VPS28-205ENST00000526204 WDR17Q8IZU2 1322 aa25.23■■□□□ 1.63
VPS28-205ENST00000526204 KBTBD3Q8NAB2 608 aa25.23■■□□□ 1.63
VPS28-205ENST00000526204 TPM2P07951 284 aa25.22■■□□□ 1.63
VPS28-205ENST00000526204 ZNF609O15014 1411 aa25.22■■□□□ 1.63
VPS28-205ENST00000526204 KDM4FA0A1W2PPD8 638 aa25.22■■□□□ 1.63
VPS28-205ENST00000526204 COL9A3Q14050 684 aaPredicted RBP25.22■■□□□ 1.63
VPS28-205ENST00000526204 TCEANC2Q96MN5 208 aa25.22■■□□□ 1.63
VPS28-205ENST00000526204 SH3TC1Q8TE82 1336 aa25.21■■□□□ 1.63
VPS28-205ENST00000526204 STRCP1A6NGW2 1772 aa25.21■■□□□ 1.63
VPS28-205ENST00000526204 IL15P40933 162 aaPredicted RBP25.21■■□□□ 1.63
VPS28-205ENST00000526204 CCDC191Q8NCU4 936 aa25.21■■□□□ 1.63
VPS28-205ENST00000526204 PTMAP06454 111 aaKnown RBP25.21■■□□□ 1.63
VPS28-205ENST00000526204 TERF1P54274 439 aa25.21■■□□□ 1.63
VPS28-205ENST00000526204 CDC37L1Q7L3B6 337 aa25.21■■□□□ 1.63
VPS28-205ENST00000526204 CHMP3Q9Y3E7 222 aa25.21■■□□□ 1.63
VPS28-205ENST00000526204 NKX1-1Q15270 411 aaPredicted RBP25.2■■□□□ 1.62
VPS28-205ENST00000526204 TOM1L2Q6ZVM7 507 aa25.2■■□□□ 1.62
VPS28-205ENST00000526204 ATG9AQ7Z3C6 839 aa25.2■■□□□ 1.62
VPS28-205ENST00000526204 PALLDQ8WX93 1383 aa25.2■■□□□ 1.62
VPS28-205ENST00000526204 HMGB1P09429 215 aaKnown RBP25.19■■□□□ 1.62
VPS28-205ENST00000526204 SCAND2PQ9GZW5 306 aaPredicted RBP25.19■■□□□ 1.62
VPS28-205ENST00000526204 PRDM11Q9NQV5 511 aa25.19■■□□□ 1.62
VPS28-205ENST00000526204 ATG3Q9NT62 314 aa25.19■■□□□ 1.62
VPS28-205ENST00000526204 TTLL7Q6ZT98 887 aa25.19■■□□□ 1.62
VPS28-205ENST00000526204 DDX46Q7L014 1031 aaKnown RBP25.19■■□□□ 1.62
VPS28-205ENST00000526204 FUCA2Q9BTY2 467 aa25.19■■□□□ 1.62
VPS28-205ENST00000526204 HELLSQ9NRZ9 838 aa25.19■■□□□ 1.62
VPS28-205ENST00000526204 GTF3C6Q969F1 213 aa25.18■■□□□ 1.62
VPS28-205ENST00000526204 NDUFB9Q9Y6M9 179 aa25.18■■□□□ 1.62
VPS28-205ENST00000526204 DTNBO60941 627 aa25.18■■□□□ 1.62
VPS28-205ENST00000526204 HCLS1P14317 486 aaPredicted RBP25.18■■□□□ 1.62
VPS28-205ENST00000526204 CYP21A2P08686 494 aa25.17■■□□□ 1.62
VPS28-205ENST00000526204 TPRNQ4KMQ1 711 aa25.17■■□□□ 1.62
VPS28-205ENST00000526204 NEUROD6Q96NK8 337 aa25.17■■□□□ 1.62
VPS28-205ENST00000526204 PAG1Q9NWQ8 432 aa25.17■■□□□ 1.62
VPS28-205ENST00000526204 CIAO1O76071 339 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 STK3Q13188 491 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 CCDC129Q6ZRS4 1044 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 BRINP3Q76B58 766 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 TTC6Q86TZ1 520 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 SEC62Q99442 399 aaKnown RBP25.16■■□□□ 1.62
VPS28-205ENST00000526204 GIMAP6Q6P9H5 292 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 FERMT3Q86UX7 667 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 DSCC1Q9BVC3 393 aa25.16■■□□□ 1.62
VPS28-205ENST00000526204 EYA2O00167 538 aa25.15■■□□□ 1.62
VPS28-205ENST00000526204 A1BGP04217 495 aa25.15■■□□□ 1.62
VPS28-205ENST00000526204 Q6ZUG5 572 aa25.15■■□□□ 1.62
VPS28-205ENST00000526204 USP25Q9UHP3 1055 aa25.15■■□□□ 1.62
VPS28-205ENST00000526204 CCDC192P0DO97 292 aa25.14■■□□□ 1.62
VPS28-205ENST00000526204 IL2RBP14784 551 aa25.14■■□□□ 1.62
VPS28-205ENST00000526204 KCPQ6ZWJ8 1503 aa25.14■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms