RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SH3TC1Q8TE82 1336 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 ZNF521Q96K83 1311 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 TAF1P21675 1872 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 HCLS1P14317 486 aaPredicted RBP13.05□□□□□ -0.32
VPS28-204ENST00000526054 HDGFL1Q5TGJ6 251 aa13.05□□□□□ -0.32
VPS28-204ENST00000526054 SUPT20HQ8NEM7 779 aa13.05□□□□□ -0.32
VPS28-204ENST00000526054 TSR2Q969E8 191 aaKnown RBP13.05□□□□□ -0.32
VPS28-204ENST00000526054 CHPF2Q9P2E5 772 aa13.05□□□□□ -0.32
VPS28-204ENST00000526054 TRMT112Q9UI30 125 aaKnown RBP13.05□□□□□ -0.32
VPS28-204ENST00000526054 TRPM7Q96QT4 1865 aa13.05□□□□□ -0.32
VPS28-204ENST00000526054 FANCIQ9NVI1 1328 aa13.05□□□□□ -0.32
VPS28-204ENST00000526054 DUOX1Q9NRD9 1551 aa13.04□□□□□ -0.32
VPS28-204ENST00000526054 TCIRG1Q13488 830 aa13.04□□□□□ -0.32
VPS28-204ENST00000526054 DUSP27Q5VZP5 1158 aa13.04□□□□□ -0.32
VPS28-204ENST00000526054 DPP8Q6V1X1 898 aaPredicted RBP13.04□□□□□ -0.32
VPS28-204ENST00000526054 CHMP4AQ9BY43 222 aa13.04□□□□□ -0.32
VPS28-204ENST00000526054 VPS33BQ9H267 617 aa13.04□□□□□ -0.32
VPS28-204ENST00000526054 THSD7BQ9C0I4 1608 aa13.03□□□□□ -0.32
VPS28-204ENST00000526054 BBOX1O75936 387 aa13.03□□□□□ -0.32
VPS28-204ENST00000526054 EPS15P42566 896 aa13.03□□□□□ -0.32
VPS28-204ENST00000526054 VEGFBP49765 207 aa13.03□□□□□ -0.32
VPS28-204ENST00000526054 GOLGA2Q08379 1002 aa13.03□□□□□ -0.32
VPS28-204ENST00000526054 DDX46Q7L014 1031 aaKnown RBP13.03□□□□□ -0.32
VPS28-204ENST00000526054 AIDAQ96BJ3 306 aa13.03□□□□□ -0.32
VPS28-204ENST00000526054 RTFDC1Q9BY42 306 aaPredicted RBP13.03□□□□□ -0.32
VPS28-204ENST00000526054 ABT1Q9ULW3 272 aaKnown RBP13.03□□□□□ -0.32
VPS28-204ENST00000526054 RASSF10A6NK89 507 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 E9PSI1 815 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 FOXN1O15353 648 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 HNRNPUQ00839 825 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS28-204ENST00000526054 GRAPQ13588 217 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 USP50Q70EL3 339 aaPredicted RBP13.02□□□□□ -0.33
VPS28-204ENST00000526054 SP8Q8IXZ3 490 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 MPNDQ8N594 471 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 PLBD2Q8NHP8 589 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 GRAPLQ8TC17 118 aaPredicted RBP13.02□□□□□ -0.33
VPS28-204ENST00000526054 ZNF428Q96B54 188 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 DBF4Q9UBU7 674 aaPredicted RBP13.02□□□□□ -0.33
VPS28-204ENST00000526054 ZNRF3Q9ULT6 936 aa13.02□□□□□ -0.33
VPS28-204ENST00000526054 CACNA1FO60840 1977 aa13.01□□□□□ -0.33
VPS28-204ENST00000526054 KIAA2012Q0VF49 1180 aa13.01□□□□□ -0.33
VPS28-204ENST00000526054 C8orf58Q8NAV2 365 aa13.01□□□□□ -0.33
VPS28-204ENST00000526054 GPRC5DQ9NZD1 345 aa13.01□□□□□ -0.33
VPS28-204ENST00000526054 CDHR2Q9BYE9 1310 aa13□□□□□ -0.33
VPS28-204ENST00000526054 ELL2O00472 640 aaPredicted RBP13□□□□□ -0.33
VPS28-204ENST00000526054 CXCL9Q07325 125 aa13□□□□□ -0.33
VPS28-204ENST00000526054 DEFB115Q30KQ5 88 aa13□□□□□ -0.33
VPS28-204ENST00000526054 TWISTNBQ3B726 338 aaPredicted RBP13□□□□□ -0.33
VPS28-204ENST00000526054 ANKRD13DQ6ZTN6 518 aa13□□□□□ -0.33
VPS28-204ENST00000526054 TMC4Q7Z404 712 aa13□□□□□ -0.33
VPS28-204ENST00000526054 SPINK5Q9NQ38 1064 aaPredicted RBP13□□□□□ -0.33
VPS28-204ENST00000526054 ADARB2Q9NS39 739 aaKnown RBP13□□□□□ -0.33
VPS28-204ENST00000526054 ATP5J2-PTCD1G3V325 749 aa12.99□□□□□ -0.33
VPS28-204ENST00000526054 CTCFP49711 727 aaPredicted RBP12.99□□□□□ -0.33
VPS28-204ENST00000526054 GMPSP49915 693 aaPredicted RBP12.99□□□□□ -0.33
VPS28-204ENST00000526054 CCDC30Q5VVM6 783 aa12.99□□□□□ -0.33
VPS28-204ENST00000526054 CIAPIN1Q6FI81 312 aa12.99□□□□□ -0.33
VPS28-204ENST00000526054 PAXIP1Q6ZW49 1069 aaPredicted RBP12.99□□□□□ -0.33
VPS28-204ENST00000526054 HYPKQ9NX55 129 aa12.99□□□□□ -0.33
VPS28-204ENST00000526054 COL4A1P02462 1669 aa12.99□□□□□ -0.33
VPS28-204ENST00000526054 WDR33Q9C0J8 1336 aaKnown RBP12.98□□□□□ -0.33
VPS28-204ENST00000526054 TRAF5O00463 557 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 RAD17O75943 681 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 EXOSC9Q06265 439 aaKnown RBP12.98□□□□□ -0.33
VPS28-204ENST00000526054 FMR1Q06787 632 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS28-204ENST00000526054 SLFN5Q08AF3 891 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 TSPYL6Q8N831 410 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 FAM89AQ96GI7 184 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 ISCA1Q9BUE6 129 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 BCL2L13Q9BXK5 485 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 PRDM10Q9NQV6 1147 aa12.98□□□□□ -0.33
VPS28-204ENST00000526054 ZBED9Q6R2W3 1325 aa12.97□□□□□ -0.33
VPS28-204ENST00000526054 TNIP1Q15025 636 aa12.97□□□□□ -0.33
VPS28-204ENST00000526054 RTL5Q5HYW3 569 aaPredicted RBP12.97□□□□□ -0.33
VPS28-204ENST00000526054 STK31Q9BXU1 1019 aa12.97□□□□□ -0.33
VPS28-204ENST00000526054 WBP1LQ9NX94 342 aa12.97□□□□□ -0.33
VPS28-204ENST00000526054 ECE1P42892 770 aa12.96□□□□□ -0.33
VPS28-204ENST00000526054 MAP2K1Q02750 393 aaPredicted RBP12.96□□□□□ -0.33
VPS28-204ENST00000526054 GRM1Q13255 1194 aa12.96□□□□□ -0.33
VPS28-204ENST00000526054 SF3B3Q15393 1217 aaKnown RBP12.96□□□□□ -0.33
VPS28-204ENST00000526054 RIC3Q7Z5B4 369 aa12.96□□□□□ -0.33
VPS28-204ENST00000526054 CELF1Q92879 486 aaKnown RBP12.96□□□□□ -0.33
VPS28-204ENST00000526054 CAPNS2Q96L46 248 aa12.96□□□□□ -0.33
VPS28-204ENST00000526054 NSFL1CQ9UNZ2 370 aaKnown RBP12.96□□□□□ -0.33
VPS28-204ENST00000526054 YDJCA8MPS7 323 aa12.95□□□□□ -0.34
VPS28-204ENST00000526054 IRS4O14654 1257 aaPredicted RBP12.95□□□□□ -0.34
VPS28-204ENST00000526054 LBX1P52954 281 aa12.95□□□□□ -0.34
VPS28-204ENST00000526054 WASHC4Q2M389 1173 aa12.95□□□□□ -0.34
VPS28-204ENST00000526054 CDCA7LQ96GN5 454 aa12.95□□□□□ -0.34
VPS28-204ENST00000526054 TLL2Q9Y6L7 1015 aa12.95□□□□□ -0.34
VPS28-204ENST00000526054 C6orf229H3BNL8 230 aa12.94□□□□□ -0.34
VPS28-204ENST00000526054 VAMP4O75379 141 aa12.94□□□□□ -0.34
VPS28-204ENST00000526054 CELF2O95319 508 aaKnown RBP12.94□□□□□ -0.34
VPS28-204ENST00000526054 TRIM28Q13263 835 aaKnown RBP12.94□□□□□ -0.34
VPS28-204ENST00000526054 CST9Q5W186 159 aa12.94□□□□□ -0.34
VPS28-204ENST00000526054 CYP4F22Q6NT55 531 aa12.94□□□□□ -0.34
VPS28-204ENST00000526054 MICALL2Q8IY33 904 aa12.94□□□□□ -0.34
VPS28-204ENST00000526054 TRPM4Q8TD43 1214 aa12.94□□□□□ -0.34
VPS28-204ENST00000526054 GLIS2Q9BZE0 524 aaPredicted RBP12.94□□□□□ -0.34
VPS28-204ENST00000526054 DBNDD1Q9H9R9 158 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms