RNA–Protein interactions for RNA: ENST00000525878.5

CSDE1-210, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-210ENST00000525878 LPIN3Q9BQK8 851 aa9.22□□□□□ -0.93
CSDE1-210ENST00000525878 DYRK3O43781 588 aa9.21□□□□□ -0.94
CSDE1-210ENST00000525878 EGFRP00533 1210 aa9.21□□□□□ -0.94
CSDE1-210ENST00000525878 TARSP26639 723 aaKnown RBP9.21□□□□□ -0.94
CSDE1-210ENST00000525878 RAC1P63000 192 aa9.21□□□□□ -0.94
CSDE1-210ENST00000525878 DHX32Q7L7V1 743 aaKnown RBP9.21□□□□□ -0.94
CSDE1-210ENST00000525878 FAM35AQ86V20 835 aa9.21□□□□□ -0.94
CSDE1-210ENST00000525878 FMR1NBQ8N0W7 255 aaPredicted RBP9.21□□□□□ -0.94
CSDE1-210ENST00000525878 GPLD1P80108 840 aa9.2□□□□□ -0.94
CSDE1-210ENST00000525878 TTC9Q92623 222 aa9.2□□□□□ -0.94
CSDE1-210ENST00000525878 VTI1AQ96AJ9 217 aa9.2□□□□□ -0.94
CSDE1-210ENST00000525878 SASH3O75995 380 aa9.19□□□□□ -0.94
CSDE1-210ENST00000525878 FKBP5Q13451 457 aaPredicted RBP9.19□□□□□ -0.94
CSDE1-210ENST00000525878 SWI5Q1ZZU3 235 aa9.19□□□□□ -0.94
CSDE1-210ENST00000525878 PERM1Q5SV97 790 aa9.19□□□□□ -0.94
CSDE1-210ENST00000525878 MSL1Q68DK7 614 aa9.19□□□□□ -0.94
CSDE1-210ENST00000525878 SHISA2Q6UWI4 295 aa9.19□□□□□ -0.94
CSDE1-210ENST00000525878 DMRTC2Q8IXT2 367 aaPredicted RBP9.19□□□□□ -0.94
CSDE1-210ENST00000525878 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.19□□□□□ -0.943e-6■■■■□ 20.3
CSDE1-210ENST00000525878 NOVA2Q9UNW9 492 aaKnown RBP9.19□□□□□ -0.94
CSDE1-210ENST00000525878 CPB1P15086 417 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 RFX1P22670 979 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 NRG1Q02297 640 aaPredicted RBP9.18□□□□□ -0.94
CSDE1-210ENST00000525878 PLAURQ03405 335 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 FAM69CQ0P6D2 419 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 ELOAQ14241 798 aaKnown RBP9.18□□□□□ -0.94
CSDE1-210ENST00000525878 FOXD4L6Q3SYB3 417 aaPredicted RBP9.18□□□□□ -0.94
CSDE1-210ENST00000525878 CDCA8Q53HL2 280 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 COX20Q5RI15 118 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 FOXD4L3Q6VB84 417 aaPredicted RBP9.18□□□□□ -0.94
CSDE1-210ENST00000525878 KRT25Q7Z3Z0 450 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 TXNRD3Q86VQ6 643 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 DTWD1Q8N5C7 304 aa9.18□□□□□ -0.94
CSDE1-210ENST00000525878 RTCBQ9Y3I0 505 aaKnown RBP9.18□□□□□ -0.94
CSDE1-210ENST00000525878 ACIN1Q9UKV3 1341 aaKnown RBP9.17□□□□□ -0.94
CSDE1-210ENST00000525878 H2AFB1P0C5Y9 115 aa9.17□□□□□ -0.94
CSDE1-210ENST00000525878 H2AFB2P0C5Z0 115 aa9.17□□□□□ -0.94
CSDE1-210ENST00000525878 RARAP10276 462 aa9.17□□□□□ -0.94
CSDE1-210ENST00000525878 SRPK2P78362 688 aaKnown RBP9.17□□□□□ -0.94
CSDE1-210ENST00000525878 OCLNQ16625 522 aa9.17□□□□□ -0.94
CSDE1-210ENST00000525878 ZMYM1Q5SVZ6 1142 aa9.17□□□□□ -0.94
CSDE1-210ENST00000525878 SSBP4Q9BWG4 385 aaPredicted RBP9.17□□□□□ -0.94
CSDE1-210ENST00000525878 ZMIZ1Q9ULJ6 1067 aa9.17□□□□□ -0.94
CSDE1-210ENST00000525878 NRLP54845 237 aa9.16□□□□□ -0.94
CSDE1-210ENST00000525878 FBXO11Q86XK2 927 aa9.16□□□□□ -0.94
CSDE1-210ENST00000525878 TREML1Q86YW5 311 aa9.16□□□□□ -0.94
CSDE1-210ENST00000525878 TLR7Q9NYK1 1049 aaKnown RBP9.16□□□□□ -0.94
CSDE1-210ENST00000525878 USP20Q9Y2K6 914 aa9.16□□□□□ -0.94
CSDE1-210ENST00000525878 KCNMB2Q9Y691 235 aa9.15□□□□□ -0.94
CSDE1-210ENST00000525878 HOXD8P13378 290 aaPredicted RBP9.14□□□□□ -0.95
CSDE1-210ENST00000525878 MLLT1Q03111 559 aaPredicted RBP9.14□□□□□ -0.95
CSDE1-210ENST00000525878 ELMSAN1Q6PJG2 1045 aa9.14□□□□□ -0.95
CSDE1-210ENST00000525878 PRIMPOLQ96LW4 560 aa9.14□□□□□ -0.95
CSDE1-210ENST00000525878 XYLBO75191 536 aa9.13□□□□□ -0.95
CSDE1-210ENST00000525878 PRSS36Q5K4E3 855 aa9.13□□□□□ -0.95
CSDE1-210ENST00000525878 ETFBKMTQ8IXQ9 262 aa9.13□□□□□ -0.95
CSDE1-210ENST00000525878 COL26A1Q96A83 441 aa9.13□□□□□ -0.95
CSDE1-210ENST00000525878 ARID4AP29374 1257 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-210ENST00000525878 WFDC8Q8IUA0 241 aa9.12□□□□□ -0.95
CSDE1-210ENST00000525878 RGL4Q8IZJ4 473 aa9.12□□□□□ -0.95
CSDE1-210ENST00000525878 SAP130Q9H0E3 1048 aa9.12□□□□□ -0.95
CSDE1-210ENST00000525878 PRMT3O60678 531 aa9.11□□□□□ -0.95
CSDE1-210ENST00000525878 DEAF1O75398 565 aaPredicted RBP9.11□□□□□ -0.95
CSDE1-210ENST00000525878 FAM26DQ5JW98 314 aa9.11□□□□□ -0.95
CSDE1-210ENST00000525878 CMTR1Q8N1G2 835 aaKnown RBP9.11□□□□□ -0.95
CSDE1-210ENST00000525878 STK32AQ8WU08 396 aa9.11□□□□□ -0.95
CSDE1-210ENST00000525878 SMG9Q9H0W8 520 aaKnown RBP9.11□□□□□ -0.95
CSDE1-210ENST00000525878 MMP20O60882 483 aa9.1□□□□□ -0.95
CSDE1-210ENST00000525878 SOX18P35713 384 aa9.1□□□□□ -0.95
CSDE1-210ENST00000525878 HFE2Q6ZVN8 426 aa9.1□□□□□ -0.95
CSDE1-210ENST00000525878 USP21Q9UK80 565 aa9.1□□□□□ -0.95
CSDE1-210ENST00000525878 LOC102724428A0A0B4J2F2 783 aa9.09□□□□□ -0.95
CSDE1-210ENST00000525878 ATG7O95352 703 aa9.09□□□□□ -0.95
CSDE1-210ENST00000525878 BRD2P25440 801 aaKnown RBP9.09□□□□□ -0.95
CSDE1-210ENST00000525878 SIK1P57059 783 aa9.09□□□□□ -0.95
CSDE1-210ENST00000525878 TRIP4Q15650 581 aaPredicted RBP9.09□□□□□ -0.95
CSDE1-210ENST00000525878 C16orf46Q6P387 395 aa9.09□□□□□ -0.95
CSDE1-210ENST00000525878 IGF2-ASQ6U949 168 aa9.09□□□□□ -0.95
CSDE1-210ENST00000525878 WFDC12Q8WWY7 111 aa9.09□□□□□ -0.95
CSDE1-210ENST00000525878 CXXC1Q9P0U4 656 aaPredicted RBP9.09□□□□□ -0.95
CSDE1-210ENST00000525878 TNFRSF10BO14763 440 aa9.08□□□□□ -0.96
CSDE1-210ENST00000525878 PSAPP07602 524 aa9.08□□□□□ -0.96
CSDE1-210ENST00000525878 EIF2AK2P19525 551 aaKnown RBP9.08□□□□□ -0.96
CSDE1-210ENST00000525878 CAPN12Q6ZSI9 719 aa9.08□□□□□ -0.96
CSDE1-210ENST00000525878 TP53INP1Q96A56 240 aa9.08□□□□□ -0.96
CSDE1-210ENST00000525878 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.07□□□□□ -0.96
CSDE1-210ENST00000525878 J3QW42 95 aa9.07□□□□□ -0.96
CSDE1-210ENST00000525878 DLL1O00548 723 aa9.07□□□□□ -0.96
CSDE1-210ENST00000525878 NOS3P29474 1203 aa9.07□□□□□ -0.96
CSDE1-210ENST00000525878 PLD4Q96BZ4 506 aa9.07□□□□□ -0.96
CSDE1-210ENST00000525878 KRTAP4-8Q9BYQ9 185 aa9.07□□□□□ -0.96
CSDE1-210ENST00000525878 ARTNQ5T4W7 220 aa9.06□□□□□ -0.96
CSDE1-210ENST00000525878 NLRP13Q86W25 1043 aa9.06□□□□□ -0.96
CSDE1-210ENST00000525878 IREB2P48200 963 aaKnown RBP9.05□□□□□ -0.96
CSDE1-210ENST00000525878 TMEM164Q5U3C3 297 aa9.05□□□□□ -0.96
CSDE1-210ENST00000525878 NSUN5Q96P11 429 aaKnown RBP9.05□□□□□ -0.96
CSDE1-210ENST00000525878 PTCD1O75127 700 aaKnown RBP9.04□□□□□ -0.96
CSDE1-210ENST00000525878 CLP1Q92989 425 aaKnown RBP9.04□□□□□ -0.96
CSDE1-210ENST00000525878 MEGF10Q96KG7 1140 aa9.04□□□□□ -0.96
CSDE1-210ENST00000525878 GHRHP01286 108 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms