RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 KLF4O43474 513 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 SMTNP53814 917 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 TBX4P57082 545 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 COPS2P61201 443 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 IFRD2Q12894 506 aaPredicted RBP7.29□□□□□ -1.24
USP47-204ENST00000525078 VASH1Q7L8A9 365 aaPredicted RBP7.29□□□□□ -1.24
USP47-204ENST00000525078 LRP10Q7Z4F1 713 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 RELL1Q8IUW5 271 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 ZNF516Q92618 1163 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 MTRQ99707 1265 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 GINM1Q9NU53 330 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 FAM13BQ9NYF5 915 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 TCEAL9Q9UHQ7 104 aa7.29□□□□□ -1.24
USP47-204ENST00000525078 MINDY4BA8MYZ0 360 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 NOS2P35228 1153 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 PWP1Q13610 501 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 RTN1Q16799 776 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 USPL1Q5W0Q7 1092 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 CYP2U1Q7Z449 544 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 ALDH16A1Q8IZ83 802 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 DNAJC7Q99615 494 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 SRCIN1Q9C0H9 1055 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 KANSL2Q9H9L4 492 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 IL21Q9HBE4 155 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 TTF2Q9UNY4 1162 aaKnown RBP7.28□□□□□ -1.24
USP47-204ENST00000525078 HCN4Q9Y3Q4 1203 aa7.28□□□□□ -1.24
USP47-204ENST00000525078 HMGB1P1B2RPK0 211 aaPredicted RBP7.27□□□□□ -1.25
USP47-204ENST00000525078 GNRH1P01148 92 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 BIRC2Q13490 618 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 TREML1Q86YW5 311 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 TRPM4Q8TD43 1214 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 HOMER2Q9NSB8 354 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 PRKAG3Q9UGI9 489 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 ADAMTS1Q9UHI8 967 aa7.27□□□□□ -1.25
USP47-204ENST00000525078 F6X3S4 739 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 CREB3O43889 395 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 GADD45BO75293 160 aaPredicted RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 HCLS1P14317 486 aaPredicted RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 GBP2P32456 591 aaPredicted RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 MTFR1Q15390 333 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 NXPE4Q6UWF7 544 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 APBB1IPQ7Z5R6 666 aaPredicted RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 LILRB2Q8N423 598 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 SGSM3Q96HU1 749 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 IER2Q9BTL4 223 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 RSRP1Q9BUV0 290 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 NOC4LQ9BVI4 516 aaKnown RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 TMPRSS4Q9NRS4 437 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 RAB6BQ9NRW1 208 aa7.26□□□□□ -1.25
USP47-204ENST00000525078 GEMIN8Q9NWZ8 242 aaKnown RBP7.26□□□□□ -1.25
USP47-204ENST00000525078 CDK2AP1O14519 115 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 ADH1BP00325 375 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 EIF4A3P38919 411 aaKnown RBP7.25□□□□□ -1.25
USP47-204ENST00000525078 MASP1P48740 699 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 RHBDL3P58872 404 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 IRX6P78412 446 aaPredicted RBP7.25□□□□□ -1.25
USP47-204ENST00000525078 TLR1Q15399 786 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 C16orf86Q6ZW13 317 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 KIAA0907Q7Z7F0 614 aaPredicted RBP7.25□□□□□ -1.25
USP47-204ENST00000525078 NBPF15Q8N660 670 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 BCO2Q9BYV7 579 aa7.25□□□□□ -1.25
USP47-204ENST00000525078 FOXD3Q9UJU5 478 aaPredicted RBP7.25□□□□□ -1.25
USP47-204ENST00000525078 EML1O00423 815 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 TLL1O43897 1013 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 SOX9P48436 509 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 SH3BP2P78314 561 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 CBLBQ13191 982 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 COL9A2Q14055 689 aaPredicted RBP7.24□□□□□ -1.25
USP47-204ENST00000525078 RALBP1Q15311 655 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 SH3PXD2AQ5TCZ1 1133 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 ZNF296Q8WUU4 475 aaPredicted RBP7.24□□□□□ -1.25
USP47-204ENST00000525078 EAF1Q96JC9 268 aaPredicted RBP7.24□□□□□ -1.25
USP47-204ENST00000525078 FEZ1Q99689 392 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 CCDC113Q9H0I3 377 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 CABP1Q9NZU7 370 aa7.24□□□□□ -1.25
USP47-204ENST00000525078 SMAD7O15105 426 aaKnown RBP7.23□□□□□ -1.25
USP47-204ENST00000525078 TNFRSF21O75509 655 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 CNGA1P29973 690 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 WNT7BP56706 349 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 DHX9Q08211 1270 aaKnown RBP7.23□□□□□ -1.25
USP47-204ENST00000525078 ARID5BQ14865 1188 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 CCDC85BQ15834 202 aaPredicted RBP7.23□□□□□ -1.25
USP47-204ENST00000525078 TNNI3KQ59H18 835 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 SNX29Q8TEQ0 813 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 RPS6KC1Q96S38 1066 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 PHACTR1Q9C0D0 580 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 SLC6A16Q9GZN6 736 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 ARHGEF10LQ9HCE6 1279 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 NPHS2Q9NP85 383 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 PPP4R2Q9NY27 417 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 EID1Q9Y6B2 187 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 USP3Q9Y6I4 520 aa7.23□□□□□ -1.25
USP47-204ENST00000525078 PHACTR2O75167 634 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 GSTT1P30711 240 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 HIRAP54198 1017 aaPredicted RBP7.22□□□□□ -1.25
USP47-204ENST00000525078 TEAD4Q15561 434 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 ZNF438Q7Z4V0 828 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 WDR75Q8IWA0 830 aaKnown RBP7.22□□□□□ -1.25
USP47-204ENST00000525078 ZNF784Q8NCA9 323 aaPredicted RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms