RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 PNMA5Q96PV4 448 aa10.04□□□□□ -0.8
SKP1-213ENST00000524288 ALBP02768 609 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 INPP5BP32019 993 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 IDH3AP50213 366 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 ARSDP51689 593 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 PRRT3Q5FWE3 981 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 ZNF428Q96B54 188 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 KLK14Q9P0G3 267 aa10.03□□□□□ -0.8
SKP1-213ENST00000524288 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.03□□□□□ -0.8
SKP1-213ENST00000524288 C1QTNF9BB2RNN3 333 aa10.02□□□□□ -0.81
SKP1-213ENST00000524288 ARID4AP29374 1257 aaPredicted RBP10.02□□□□□ -0.81
SKP1-213ENST00000524288 PCSK7Q16549 785 aa10.02□□□□□ -0.81
SKP1-213ENST00000524288 C20orf204Q6ZNR8 217 aa10.02□□□□□ -0.81
SKP1-213ENST00000524288 CD163Q86VB7 1156 aa10.02□□□□□ -0.81
SKP1-213ENST00000524288 UBE2OQ9C0C9 1292 aaKnown RBP10.02□□□□□ -0.81
SKP1-213ENST00000524288 MAP3K6O95382 1288 aa10.01□□□□□ -0.81
SKP1-213ENST00000524288 BAG6P46379 1132 aa10.01□□□□□ -0.81
SKP1-213ENST00000524288 COL9A3Q14050 684 aaPredicted RBP10.01□□□□□ -0.81
SKP1-213ENST00000524288 MKNK1Q9BUB5 465 aa10.01□□□□□ -0.81
SKP1-213ENST00000524288 SLC6A14Q9UN76 642 aa10.01□□□□□ -0.81
SKP1-213ENST00000524288 LILRB5O75023 590 aa10□□□□□ -0.81
SKP1-213ENST00000524288 MICAL2O94851 1124 aa10□□□□□ -0.81
SKP1-213ENST00000524288 COL26A1Q96A83 441 aa10□□□□□ -0.81
SKP1-213ENST00000524288 ADAM23O75077 832 aa9.99□□□□□ -0.81
SKP1-213ENST00000524288 NID1P14543 1247 aa9.99□□□□□ -0.81
SKP1-213ENST00000524288 NFKB1P19838 968 aa9.99□□□□□ -0.81
SKP1-213ENST00000524288 CHRNA4P43681 627 aa9.99□□□□□ -0.81
SKP1-213ENST00000524288 FKBP5Q13451 457 aaPredicted RBP9.99□□□□□ -0.81
SKP1-213ENST00000524288 OCLNQ16625 522 aa9.99□□□□□ -0.81
SKP1-213ENST00000524288 CXXC1Q9P0U4 656 aaPredicted RBP9.99□□□□□ -0.81
SKP1-213ENST00000524288 LOC100996750A0A140TA64 210 aa9.98□□□□□ -0.81
SKP1-213ENST00000524288 GRNP28799 593 aaKnown RBP9.98□□□□□ -0.81
SKP1-213ENST00000524288 KRTAP4-6Q9BYQ5 205 aa9.98□□□□□ -0.81
SKP1-213ENST00000524288 ANO2Q9NQ90 1003 aa9.98□□□□□ -0.81
SKP1-213ENST00000524288 DNAJB12Q9NXW2 375 aaKnown RBP9.98□□□□□ -0.81
SKP1-213ENST00000524288 ABL1P00519 1130 aa9.97□□□□□ -0.81
SKP1-213ENST00000524288 RBM25P49756 843 aaKnown RBP9.97□□□□□ -0.81
SKP1-213ENST00000524288 TBC1D8BQ0IIM8 1120 aa9.97□□□□□ -0.81
SKP1-213ENST00000524288 IFT43Q96FT9 208 aa9.97□□□□□ -0.81
SKP1-213ENST00000524288 NACC1Q96RE7 527 aa9.97□□□□□ -0.81
SKP1-213ENST00000524288 TRIM28Q13263 835 aaKnown RBP9.96□□□□□ -0.82
SKP1-213ENST00000524288 ZNF211Q13398 564 aaPredicted RBP9.96□□□□□ -0.82
SKP1-213ENST00000524288 IGFLR1Q9H665 355 aa9.96□□□□□ -0.82
SKP1-213ENST00000524288 LRFN2Q9ULH4 789 aa9.96□□□□□ -0.82
SKP1-213ENST00000524288 SOWAHDA6NJG2 315 aa9.95□□□□□ -0.82
SKP1-213ENST00000524288 K7ELQ4 463 aaPredicted RBP9.95□□□□□ -0.82
SKP1-213ENST00000524288 APBA3O96018 575 aa9.95□□□□□ -0.82
SKP1-213ENST00000524288 EGFRP00533 1210 aa9.95□□□□□ -0.82
SKP1-213ENST00000524288 COX20Q5RI15 118 aa9.95□□□□□ -0.82
SKP1-213ENST00000524288 CAPN12Q6ZSI9 719 aa9.95□□□□□ -0.82
SKP1-213ENST00000524288 C8orf86Q6ZUL3 223 aa9.95□□□□□ -0.82
SKP1-213ENST00000524288 BIN2Q9UBW5 565 aaPredicted RBP9.95□□□□□ -0.82
SKP1-213ENST00000524288 JPH1Q9HDC5 661 aaPredicted RBP9.94□□□□□ -0.82
SKP1-213ENST00000524288 SEPT3Q9UH03 358 aa9.94□□□□□ -0.82
SKP1-213ENST00000524288 OPLAHO14841 1288 aa9.93□□□□□ -0.82
SKP1-213ENST00000524288 PTCD1O75127 700 aaKnown RBP9.93□□□□□ -0.82
SKP1-213ENST00000524288 PSAPL1Q6NUJ1 521 aa9.93□□□□□ -0.82
SKP1-213ENST00000524288 C16orf46Q6P387 395 aa9.93□□□□□ -0.82
SKP1-213ENST00000524288 DHX32Q7L7V1 743 aaKnown RBP9.93□□□□□ -0.82
SKP1-213ENST00000524288 TREML1Q86YW5 311 aa9.93□□□□□ -0.82
SKP1-213ENST00000524288 TRPM4Q8TD43 1214 aa9.93□□□□□ -0.82
SKP1-213ENST00000524288 FRRS1LQ9P0K9 344 aa9.93□□□□□ -0.82
SKP1-213ENST00000524288 RTCBQ9Y3I0 505 aaKnown RBP9.93□□□□□ -0.82
SKP1-213ENST00000524288 H3BRB1 525 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 RGS9O75916 674 aaPredicted RBP9.92□□□□□ -0.82
SKP1-213ENST00000524288 RARAP10276 462 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 BRD2P25440 801 aaKnown RBP9.92□□□□□ -0.82
SKP1-213ENST00000524288 GATA4P43694 442 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 GPLD1P80108 840 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 TRAPPC3LQ5T215 181 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 TUT1Q9H6E5 874 aaKnown RBP9.92□□□□□ -0.82
SKP1-213ENST00000524288 ZFATQ9P243 1243 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 NAGPAQ9UK23 515 aa9.92□□□□□ -0.82
SKP1-213ENST00000524288 MTMR3Q13615 1198 aa9.91□□□□□ -0.82
SKP1-213ENST00000524288 FAM35AQ86V20 835 aa9.91□□□□□ -0.82
SKP1-213ENST00000524288 ELNP15502 786 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 TARSP26639 723 aaKnown RBP9.9□□□□□ -0.82
SKP1-213ENST00000524288 AFF1P51825 1210 aaKnown RBP9.9□□□□□ -0.82
SKP1-213ENST00000524288 NRLP54845 237 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 RAC1P63000 192 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 NAA30Q147X3 362 aaPredicted RBP9.9□□□□□ -0.82
SKP1-213ENST00000524288 KRT25Q7Z3Z0 450 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 NUDT8Q8WV74 236 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 TTC9Q92623 222 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 FAM13BQ9NYF5 915 aa9.9□□□□□ -0.82
SKP1-213ENST00000524288 XYLBO75191 536 aa9.89□□□□□ -0.83
SKP1-213ENST00000524288 SASH3O75995 380 aa9.89□□□□□ -0.83
SKP1-213ENST00000524288 RGL4Q8IZJ4 473 aa9.89□□□□□ -0.83
SKP1-213ENST00000524288 GTF3C2Q8WUA4 911 aaPredicted RBP9.89□□□□□ -0.83
SKP1-213ENST00000524288 A0A0A0MRY4 1105 aa9.88□□□□□ -0.83
SKP1-213ENST00000524288 FAM229AH3BQW9 127 aa9.88□□□□□ -0.83
SKP1-213ENST00000524288 FURINP09958 794 aa9.88□□□□□ -0.83
SKP1-213ENST00000524288 CMTR1Q8N1G2 835 aaKnown RBP9.88□□□□□ -0.83
SKP1-213ENST00000524288 TLR7Q9NYK1 1049 aaKnown RBP9.88□□□□□ -0.83
SKP1-213ENST00000524288 C9orf172C9J069 976 aa9.87□□□□□ -0.83
SKP1-213ENST00000524288 HOXD8P13378 290 aaPredicted RBP9.87□□□□□ -0.83
SKP1-213ENST00000524288 CPB1P15086 417 aa9.87□□□□□ -0.83
SKP1-213ENST00000524288 SOX18P35713 384 aa9.87□□□□□ -0.83
SKP1-213ENST00000524288 ILDR2Q71H61 639 aa9.87□□□□□ -0.83
SKP1-213ENST00000524288 ETFBKMTQ8IXQ9 262 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms