RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 HSP90B1P14625 803 aaKnown RBP19.27■□□□□ 0.68
LSM1-203ENST00000520755 RPGRQ92834 1020 aaKnown RBP19.27■□□□□ 0.68
LSM1-203ENST00000520755 MASTLQ96GX5 879 aa19.26■□□□□ 0.67
LSM1-203ENST00000520755 ZBTB40Q9NUA8 1239 aa19.26■□□□□ 0.67
LSM1-203ENST00000520755 PIM2Q9P1W9 311 aa19.26■□□□□ 0.67
LSM1-203ENST00000520755 COL4A1P02462 1669 aa19.25■□□□□ 0.67
LSM1-203ENST00000520755 PDE8AO60658 829 aa19.25■□□□□ 0.67
LSM1-203ENST00000520755 NPR1P16066 1061 aa19.25■□□□□ 0.67
LSM1-203ENST00000520755 CRY2Q49AN0 593 aa19.25■□□□□ 0.67
LSM1-203ENST00000520755 SLX4Q8IY92 1834 aa19.25■□□□□ 0.67
LSM1-203ENST00000520755 ARFGEF1Q9Y6D6 1849 aa19.25■□□□□ 0.67
LSM1-203ENST00000520755 NEFLP07196 543 aa19.24■□□□□ 0.67
LSM1-203ENST00000520755 STYK1Q6J9G0 422 aa19.24■□□□□ 0.67
LSM1-203ENST00000520755 KAZALD1Q96I82 304 aa19.24■□□□□ 0.67
LSM1-203ENST00000520755 C1orf115Q9H7X2 142 aa19.24■□□□□ 0.67
LSM1-203ENST00000520755 A0A1B0GUL6 1792 aa19.24■□□□□ 0.67
LSM1-203ENST00000520755 GOLGB1Q14789 3259 aaKnown RBP19.23■□□□□ 0.67
LSM1-203ENST00000520755 DALRD3Q5D0E6 543 aaKnown RBP19.23■□□□□ 0.67
LSM1-203ENST00000520755 TTLL6Q8N841 843 aa19.23■□□□□ 0.67
LSM1-203ENST00000520755 RBM17Q96I25 401 aaKnown RBP19.23■□□□□ 0.67
LSM1-203ENST00000520755 SUCLG2Q96I99 432 aa19.23■□□□□ 0.67
LSM1-203ENST00000520755 CCDC85AQ96PX6 553 aaPredicted RBP19.23■□□□□ 0.67
LSM1-203ENST00000520755 BCS1LQ9Y276 419 aa19.23■□□□□ 0.67
LSM1-203ENST00000520755 UBTFL1P0CB47 393 aaPredicted RBP19.22■□□□□ 0.67
LSM1-203ENST00000520755 CTSWP56202 376 aa19.22■□□□□ 0.67
LSM1-203ENST00000520755 SF3B3Q15393 1217 aaKnown RBP19.22■□□□□ 0.67
LSM1-203ENST00000520755 GPR162Q16538 588 aa19.22■□□□□ 0.67
LSM1-203ENST00000520755 CNKSR1Q969H4 720 aa19.22■□□□□ 0.67
LSM1-203ENST00000520755 GNAI3P08754 354 aa19.21■□□□□ 0.67
LSM1-203ENST00000520755 HOXA10P31260 410 aaPredicted RBP19.21■□□□□ 0.67
LSM1-203ENST00000520755 EPHA10Q5JZY3 1008 aa19.21■□□□□ 0.67
LSM1-203ENST00000520755 DDX46Q7L014 1031 aaKnown RBP19.21■□□□□ 0.67
LSM1-203ENST00000520755 PLA2G12BQ9BX93 195 aa19.21■□□□□ 0.67
LSM1-203ENST00000520755 LRRFIP2Q9Y608 721 aaKnown RBP19.21■□□□□ 0.67
LSM1-203ENST00000520755 YBX3P16989 372 aaKnown RBP eCLIP19.2■□□□□ 0.66
LSM1-203ENST00000520755 ALDH1B1P30837 517 aa19.2■□□□□ 0.66
LSM1-203ENST00000520755 CCDC152Q4G0S7 254 aa19.2■□□□□ 0.66
LSM1-203ENST00000520755 PRPF40BQ6NWY9 871 aaKnown RBP19.2■□□□□ 0.66
LSM1-203ENST00000520755 FOXO4P98177 505 aa19.19■□□□□ 0.66
LSM1-203ENST00000520755 ANKRD44Q8N8A2 993 aa19.19■□□□□ 0.66
LSM1-203ENST00000520755 TTLL11Q8NHH1 800 aa19.19■□□□□ 0.66
LSM1-203ENST00000520755 CRAMP1Q96RY5 1269 aa19.19■□□□□ 0.66
LSM1-203ENST00000520755 ZNF219Q9P2Y4 722 aaPredicted RBP19.19■□□□□ 0.66
LSM1-203ENST00000520755 CHMP3Q9Y3E7 222 aa19.19■□□□□ 0.66
LSM1-203ENST00000520755 DCAF8L1A6NGE4 600 aa19.18■□□□□ 0.66
LSM1-203ENST00000520755 GNAI2P04899 355 aa19.18■□□□□ 0.66
LSM1-203ENST00000520755 BICC1Q9H694 974 aaKnown RBP19.18■□□□□ 0.66
LSM1-203ENST00000520755 GREM2Q9H772 168 aa19.18■□□□□ 0.66
LSM1-203ENST00000520755 PCDHB15Q9Y5E8 787 aa19.18■□□□□ 0.66
LSM1-203ENST00000520755 FAM161AQ3B820 660 aa19.17■□□□□ 0.66
LSM1-203ENST00000520755 LMBR1LQ6UX01 489 aa19.17■□□□□ 0.66
LSM1-203ENST00000520755 SEC31BQ9NQW1 1179 aa19.17■□□□□ 0.66
LSM1-203ENST00000520755 PPEF1O14829 653 aaPredicted RBP19.16■□□□□ 0.66
LSM1-203ENST00000520755 C21orf2O43822 256 aa19.16■□□□□ 0.66
LSM1-203ENST00000520755 GRAPQ13588 217 aa19.16■□□□□ 0.66
LSM1-203ENST00000520755 RABL6Q3YEC7 729 aaPredicted RBP19.16■□□□□ 0.66
LSM1-203ENST00000520755 CEP85Q6P2H3 762 aa19.16■□□□□ 0.66
LSM1-203ENST00000520755 GRAPLQ8TC17 118 aaPredicted RBP19.16■□□□□ 0.66
LSM1-203ENST00000520755 CELF1Q92879 486 aaKnown RBP19.16■□□□□ 0.66
LSM1-203ENST00000520755 CHMP4BQ9H444 224 aaKnown RBP19.16■□□□□ 0.66
LSM1-203ENST00000520755 LRRC37AA6NMS7 1700 aa19.15■□□□□ 0.66
LSM1-203ENST00000520755 CSF1RP07333 972 aa19.15■□□□□ 0.66
LSM1-203ENST00000520755 AAMPQ13685 434 aa19.15■□□□□ 0.66
LSM1-203ENST00000520755 SIRT2Q8IXJ6 389 aa19.15■□□□□ 0.66
LSM1-203ENST00000520755 RTL9Q8NET4 1388 aa19.15■□□□□ 0.66
LSM1-203ENST00000520755 ITGA6P23229 1130 aa19.14■□□□□ 0.65
LSM1-203ENST00000520755 MTX1Q13505 466 aa19.14■□□□□ 0.65
LSM1-203ENST00000520755 HDAC5Q9UQL6 1122 aa19.14■□□□□ 0.65
LSM1-203ENST00000520755 FER1L6Q2WGJ9 1857 aa19.14■□□□□ 0.65
LSM1-203ENST00000520755 PNMA6EA0A0J9YXQ4 647 aa19.13■□□□□ 0.65
LSM1-203ENST00000520755 BBOX1O75936 387 aa19.13■□□□□ 0.65
LSM1-203ENST00000520755 OLFM4Q6UX06 510 aa19.13■□□□□ 0.65
LSM1-203ENST00000520755 SLC51AQ86UW1 340 aa19.13■□□□□ 0.65
LSM1-203ENST00000520755 CDC5LQ99459 802 aaKnown RBP19.13■□□□□ 0.65
LSM1-203ENST00000520755 ANKRD18BA2A2Z9 1011 aa19.12■□□□□ 0.65
LSM1-203ENST00000520755 GRIN3BO60391 1043 aa19.12■□□□□ 0.65
LSM1-203ENST00000520755 RPS8P62241 208 aaKnown RBP19.12■□□□□ 0.65
LSM1-203ENST00000520755 IFIT5Q13325 482 aaKnown RBP19.12■□□□□ 0.65
LSM1-203ENST00000520755 ERICH6BQ5W0A0 696 aa19.12■□□□□ 0.65
LSM1-203ENST00000520755 ARHGAP27Q6ZUM4 889 aa19.12■□□□□ 0.65
LSM1-203ENST00000520755 ANKRD18AQ8IVF6 992 aa19.12■□□□□ 0.65
LSM1-203ENST00000520755 CCDC88AQ3V6T2 1871 aa19.11■□□□□ 0.65
LSM1-203ENST00000520755 CCDC57Q2TAC2 916 aa19.11■□□□□ 0.65
LSM1-203ENST00000520755 C7orf43Q8WVR3 580 aa19.11■□□□□ 0.65
LSM1-203ENST00000520755 ATP6V0A2Q9Y487 856 aa19.11■□□□□ 0.65
LSM1-203ENST00000520755 UTRNP46939 3433 aa19.11■□□□□ 0.65
LSM1-203ENST00000520755 POLA2Q14181 598 aa19.1■□□□□ 0.65
LSM1-203ENST00000520755 CCDC93Q567U6 631 aa19.1■□□□□ 0.65
LSM1-203ENST00000520755 TAF7LQ5H9L4 462 aa19.1■□□□□ 0.65
LSM1-203ENST00000520755 SOGA3Q5TF21 947 aa19.1■□□□□ 0.65
LSM1-203ENST00000520755 TMX4Q9H1E5 349 aaPredicted RBP19.1■□□□□ 0.65
LSM1-203ENST00000520755 IGHMBP2P38935 993 aaKnown RBP19.09■□□□□ 0.65
LSM1-203ENST00000520755 RFX5P48382 616 aaPredicted RBP19.09■□□□□ 0.65
LSM1-203ENST00000520755 ATP8B2P98198 1209 aa19.09■□□□□ 0.65
LSM1-203ENST00000520755 TMC4Q7Z404 712 aa19.09■□□□□ 0.65
LSM1-203ENST00000520755 RPAP2Q8IXW5 612 aaPredicted RBP19.09■□□□□ 0.65
LSM1-203ENST00000520755 SP8Q8IXZ3 490 aa19.09■□□□□ 0.65
LSM1-203ENST00000520755 SSH3Q8TE77 659 aa19.09■□□□□ 0.65
LSM1-203ENST00000520755 ZNF594Q96JF6 807 aaPredicted RBP19.09■□□□□ 0.65
LSM1-203ENST00000520755 GTF3C3Q9Y5Q9 886 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms